8SXS | pdb_00008sxs

Crystal structure of a Nudix hydrolase effector from Magnaporthe oryzae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.57 Å
  • R-Value Free: 
    0.196 (Depositor), 0.190 (DCC) 
  • R-Value Work: 
    0.156 (Depositor), 0.160 (DCC) 
  • R-Value Observed: 
    0.158 (Depositor) 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Plant pathogenic fungi hijack phosphate signaling with conserved enzymatic effectors.

McCombe, C.L.Wegner, A.Wirtz, L.Zamora, C.S.Casanova, F.Aditya, S.Greenwood, J.R.de Paula, S.England, E.Shang, S.Ericsson, D.J.Oliveira-Garcia, E.Williams, S.J.Schaffrath, U.

(2025) Science 387: 955-962

  • DOI: https://doi.org/10.1126/science.adl5764
  • Primary Citation of Related Structures:  
    8SXS

  • PubMed Abstract: 

    Inorganic phosphate (Pi) is essential for life, and plant cells monitor Pi availability by sensing inositol pyrophosphate (PP-InsP) levels. In this work, we describe the hijacking of plant phosphate sensing by a conserved family of Nudix hydrolase effectors from pathogenic Magnaporthe and Colletotrichum fungi. Structural and enzymatic analyses of the Nudix effector family demonstrate that they selectively hydrolyze PP-InsP. Gene deletion experiments of Nudix effectors in Magnaporthe oryzae , Colletotrichum higginsianum , and Colletotrichum graminicola indicate that PP-InsP hydrolysis substantially enhances disease symptoms in diverse pathosystems. Further, we show that this conserved effector family induces phosphate starvation signaling in plants. Our study elucidates a molecular mechanism, used by multiple phytopathogenic fungi, that manipulates the highly conserved plant phosphate sensing pathway to exacerbate disease.


  • Organizational Affiliation
    • Research School of Biology, The Australian National University, Canberra, ACT, Australia.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Nudix hydrolase domain-containing protein
A, B
126Pyricularia oryzae 70-15Mutation(s): 0 
Gene Names: MGG_14156
UniProt
Find proteins for G5EH10 (Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958))
Explore G5EH10 
Go to UniProtKB:  G5EH10
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG5EH10
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.57 Å
  • R-Value Free:  0.196 (Depositor), 0.190 (DCC) 
  • R-Value Work:  0.156 (Depositor), 0.160 (DCC) 
  • R-Value Observed: 0.158 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 59.188α = 90
b = 60.545β = 90
c = 62.492γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing
Cootmodel building
PHENIXmodel building

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Australian Research Council (ARC)AustraliaDE160100893
Australian Research Council (ARC)AustraliaFT200100135

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-22
    Type: Initial release
  • Version 1.1: 2024-11-06
    Changes: Structure summary
  • Version 1.2: 2025-03-12
    Changes: Database references