8SWF

Cryo-EM structure of NLRP3 open octamer

PDB DOI: https://doi.org/10.2210/pdb8SWF/pdb
EM Map EMD-40811: EMDB EMDataResource

Classification: IMMUNE SYSTEM
Organism(s): Homo sapiens
Expression System: Spodoptera frugiperda
Mutation(s): No

Deposited: 2023-05-18 Released: 2024-02-14
Deposition Author(s): Yu, X., Matico, R.E., Miller, R., Schoubroeck, B.V., Grauwen, K., Suarez, J., Pietrak, B., Haloi, N., Yin, Y., Tresadern, G.J., Perez-Benito, L., Lindahl, E., Bottelbergs, A., Oehlrich, D., Opdenbosch, N.V., Sharma, S.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM structures of NLRP3 reveal its self-activation mechanism

Yu, X., Matico, R.E., Miller, R., Schoubroeck, B.V., Grauwen, K., Suarez, J., Pietrak, B., Haloi, N., Yin, Y., Tresadern, G.J., Perez-Benito, L., Lindahl, E., Bottelbergs, A., Oehlrich, D., Opdenbosch, N.V., Sharma, S.

(2024) Nat Commun

Macromolecule Content

Total Structure Weight: 829.41 kDa
Atom Count: 53,244
Modelled Residue Count: 6,676
Deposited Residue Count: 7,280
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NACHT, LRR and PYD domains-containing protein 3	A, B, C, D, E A, B, C, D, E, F, G, H	910	Homo sapiens	Mutation(s): 0 Gene Names: NLRP3, C1orf7, CIAS1, NALP3, PYPAF1 EC: 3.6.4
UniProt & NIH Common Fund Data Resources
Find proteins for Q96P20 (Homo sapiens) Explore Q96P20 Go to UniProtKB: Q96P20
PHAROS: Q96P20
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q96P20
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.39 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-02-14

Deposition Author(s):

Schoubroeck, B.V.

Tresadern, G.J.

Perez-Benito, L.

Bottelbergs, A.

Opdenbosch, N.V.

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2024-02-14
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.