8SVC

Crystal Structure of SBP from Klebsiella pneumoniae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.185 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Zinc acquisition and its contribution to Klebsiella pneumoniae virulence.

Maunders, E.A.Giles, M.W.Ganio, K.Cunningham, B.A.Bennett-Wood, V.Cole, G.B.Ng, D.Lai, C.C.Neville, S.L.Moraes, T.F.McDevitt, C.A.Tan, A.

(2023) Front Cell Infect Microbiol 13: 1322973-1322973

  • DOI: https://doi.org/10.3389/fcimb.2023.1322973
  • Primary Citation of Related Structures:  
    8SVC

  • PubMed Abstract: 

    Klebsiella pneumoniae is a World Health Organization priority pathogen and a significant clinical concern for infections of the respiratory and urinary tracts due to widespread and increasing resistance to antimicrobials. In the absence of a vaccine, there is an urgent need to identify novel targets for therapeutic development. Bacterial pathogens, including K. pneumoniae , require the d -block metal ion zinc as an essential micronutrient, which serves as a cofactor for ~6% of the proteome. During infection, zinc acquisition necessitates the use of high affinity uptake systems to overcome niche-specific zinc limitation and host-mediated nutritional immunity. Here, we report the identification of ZnuCBA and ZniCBA, two ATP-binding cassette permeases that are highly conserved in Klebsiella species and contribute to K. pneumoniae AJ218 zinc homeostasis, and the high-resolution structure of the zinc-recruiting solute-binding protein ZniA. The Znu and Zni permeases appear functionally redundant with abrogation of both systems required to reduce K. pneumoniae zinc accumulation. Disruption of both systems also exerted pleiotropic effects on the homeostasis of other d -block elements. Zinc limitation perturbed K. pneumoniae cell morphology and compromised resistance to stressors, such as salt and oxidative stress. The mutant strain lacking both systems showed significantly impaired virulence in acute lung infection models, highlighting the necessity of zinc acquisition in the virulence and pathogenicity of K. pneumoniae .


  • Organizational Affiliation

    Department of Microbiology and Immunology, The Peter Doherty Institute for Infection and Immunity, University of Melbourne, Melbourne, VIC, Australia.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Metal ABC transporter substrate-binding protein316Klebsiella pneumoniaeMutation(s): 0 
Gene Names: EW045_RS05545
UniProt
Find proteins for A0A4S7G0W1 (Klebsiella pneumoniae subsp. pneumoniae)
Explore A0A4S7G0W1 
Go to UniProtKB:  A0A4S7G0W1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A4S7G0W1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.185 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 62.187α = 90
b = 141.291β = 90
c = 71.388γ = 90
Software Package:
Software NamePurpose
autoPROCdata reduction
PHENIXphasing
PHENIXrefinement
Cootmodel building
autoPROCdata scaling

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Natural Sciences and Engineering Research Council (NSERC, Canada)CanadaRGPIN-2018-06546
Australian Research Council (ARC)AustraliaDP220100713
National Health and Medical Research Council (NHMRC, Australia)Australia2010400

Revision History  (Full details and data files)

  • Version 1.0: 2024-01-24
    Type: Initial release
  • Version 1.1: 2024-05-01
    Changes: Database references