8SV7 | pdb_00008sv7

The 1.53 Angstrom structure of human Tango2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.53 Å
  • R-Value Free: 
    0.196 (Depositor), 0.180 (DCC) 
  • R-Value Work: 
    0.168 (Depositor), 0.170 (DCC) 

Starting Model: in silico
View more details

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The crystal structure of human transport and Golgi organization 2 homolog (TANGO2) suggests a cysteine N-terminal nucleophile (Ntn) hydrolase.

Zhou, D.Chen, L.Rose, J.Wang, B.C.

(2026) Acta Crystallogr D Struct Biol 82: 383-396

  • DOI: https://doi.org/10.1107/S2059798326001968
  • Primary Citation Related Structures: 
    8SV7

  • PubMed Abstract: 

    Recently, there has been growing interest in the function and physiological importance of human TANGO2 (transport and Golgi organization 2 homolog), particularly whether it acts as a heme-trafficking protein. To address this question, we experimentally determined the three-dimensional structure of TANGO2. Our crystallographic analysis indicates that interactions between heme and TANGO2 are nonspecific. Structural comparison of the TANGO2 crystal structure with known cysteine Ntn-hydrolases allowed us to identify a putative active site, catalytic residues and a substrate-binding cavity that correspond to residues that are mutated in pathogenic TANGO2 variants. Based on these features, we propose that TANGO2 may utilize fatty-acid derivatives as substrates, suggesting a potential role in lipid metabolism. Mutations in the human TANGO2 gene cause TANGO2 deficiency disorder, a multisystem, life-threatening disease with onset in early childhood. Together, our results provide new insights into the molecular function of TANGO2 and help to resolve the ongoing debate regarding whether it functions as a heme-trafficking protein.


  • Organizational Affiliation
    • Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transport and Golgi organization protein 2 homolog
A, B
276Homo sapiensMutation(s): 0 
Gene Names: TANGO2C22orf25
UniProt & NIH Common Fund Data Resources
Find proteins for Q6ICL3 (Homo sapiens)
Explore Q6ICL3 
Go to UniProtKB:  Q6ICL3
PHAROS:  Q6ICL3
GTEx:  ENSG00000183597 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6ICL3
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.53 Å
  • R-Value Free:  0.196 (Depositor), 0.180 (DCC) 
  • R-Value Work:  0.168 (Depositor), 0.170 (DCC) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 49.73α = 90
b = 49.96β = 90
c = 241.38γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata scaling
XDSdata reduction
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
The Ramsey-GRA Endowment fundsUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-26
    Type: Initial release
  • Version 1.1: 2026-03-04
    Changes: Author supporting evidence, Structure summary
  • Version 1.2: 2026-04-15
    Changes: Database references