8SGR

human liver mitochondrial Isovaleryl-CoA dehydrogenase

  • Classification: OXIDOREDUCTASE
  • Organism(s): Homo sapiens
  • Mutation(s): No 

  • Deposited: 2023-04-13 Released: 2024-02-21 
  • Deposition Author(s): Zhang, Z.
  • Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.84 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

High-Resolution Structural Proteomics of Mitochondria Using the 'Build and Retrieve' Methodology.

Zhang, Z.Tringides, M.L.Morgan, C.E.Miyagi, M.Mears, J.A.Hoppel, C.L.Yu, E.W.

(2023) Mol Cell Proteomics 22: 100666-100666

  • DOI: https://doi.org/10.1016/j.mcpro.2023.100666
  • Primary Citation of Related Structures:  
    8SGP, 8SGR, 8SGS, 8SGV, 8SHS, 8SK6, 8SK8, 8SKR, 8SKS

  • PubMed Abstract: 

    The application of integrated systems biology to the field of structural biology is a promising new direction, although it is still in the infant stages of development. Here we report the use of single particle cryo-EM to identify multiple proteins from three enriched heterogeneous fractions prepared from human liver mitochondrial lysate. We simultaneously identify and solve high-resolution structures of nine essential mitochondrial enzymes with key metabolic functions, including fatty acid catabolism, reactive oxidative species clearance, and amino acid metabolism. Our methodology also identified multiple distinct members of the acyl-CoA dehydrogenase family. This work highlights the potential of cryo-EM to explore tissue proteomics at the atomic level.


  • Organizational Affiliation

    Department of Pharmacology, Case Western Reserve University School of Medicine, Cleveland, Ohio, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Isovaleryl-CoA dehydrogenase, mitochondrial
A, B, C, D
426Homo sapiensMutation(s): 0 
EC: 1.3.8.4 (PDB Primary Data), 1.3.8.1 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for P26440 (Homo sapiens)
Explore P26440 
Go to UniProtKB:  P26440
PHAROS:  P26440
GTEx:  ENSG00000128928 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP26440
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.84 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2024-02-21 
  • Deposition Author(s): Zhang, Z.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesR01AI145069

Revision History  (Full details and data files)

  • Version 1.0: 2024-02-21
    Type: Initial release