8SG4

E1435Q Ycf1 mutant in dephosphorylated state

• PDB DOI: https://doi.org/10.2210/pdb8SG4/pdb
• EM Map EMD-40451: EMDB EMDataResource

• Classification: MEMBRANE PROTEIN
• Organism(s): Saccharomyces cerevisiae
• Expression System: Saccharomyces cerevisiae
• Mutation(s): Yes 
• Membrane Protein: Yes  PDBTM


• Deposited: 2023-04-11 Released: 2024-03-06 
• Deposition Author(s): Khandelwal, N.K., Tomasiak, T.M.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.11 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

E1435Q Ycf1 mutant in dephosphorylated state

Khandelwal, N.K., Tomasiak, T.M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 176.21 kDa 
• Atom Count: 11,715 
• Modelled Residue Count: 1,469 
• Deposited Residue Count: 1,560 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Metal resistance protein YCF1	A	1,560	Saccharomyces cerevisiae	Mutation(s): 1  Gene Names: YCF1, YDR135C, YD9302.11C EC: 7.2.2.2 (PDB Primary Data), 7.6.2.3 (PDB Primary Data) Membrane Entity: Yes
UniProt
Find proteins for P39109 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P39109  Go to UniProtKB:  P39109

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.11 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	4.2.1
MODEL REFINEMENT	PHENIX

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-03-06 
Deposition Author(s): Khandelwal, N.K., Tomasiak, T.M.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	NIH R00 GM11424
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	NIH R01 AI156270

Revision History  

• Version 1.0: 2024-03-06
  Type: Initial release