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 8S30 | pdb_00008s30

Crystal structure of human PLK1 Polo-Box Domain in complex with Mis18


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 
    0.271 (Depositor), 0.274 (DCC) 
  • R-Value Work: 
    0.217 (Depositor), 0.217 (DCC) 
  • R-Value Observed: 
    0.219 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 8S30

This is version 1.2 of the entry. See complete history. 

Literature

PLK1-mediated phosphorylation cascade activates Mis18 complex to ensure centromere inheritance.

Parashara, P., Medina-Pritchard, B., Abad, M.A., Sotelo-Parrilla, P., Thamkachy, R., Grundei, D., Zou, J., Spanos, C., Kumar, C.N., Basquin, C., Das, V., Yan, Z., Al-Murtadha, A.A., Kelly, D.A., McHugh, T., Imhof, A., Rappsilber, J., Jeyaprakash, A.A.

(2024) Science 385: 1098-1104

  • DOI: https://doi.org/10.1126/science.ado8270
  • Primary Citation Related Structures: 
    8S30, 8S31

  • PubMed Abstract: 

    Accurate chromosome segregation requires the attachment of microtubules to centromeres, epigenetically defined by the enrichment of CENP-A nucleosomes. During DNA replication, CENP-A nucleosomes undergo dilution. To preserve centromere identity, correct amounts of CENP-A must be restored in a cell cycle-controlled manner orchestrated by the Mis18 complex (Mis18α-Mis18β-Mis18BP1). We demonstrate here that PLK1 interacts with the Mis18 complex by recognizing self-primed phosphorylations of Mis18α (Ser 54 ) and Mis18BP1 (Thr 78 and Ser 93 ) through its Polo-box domain. Disrupting these phosphorylations perturbed both centromere recruitment of the CENP-A chaperone HJURP and new CENP-A loading. Biochemical and functional analyses showed that phosphorylation of Mis18α and PLK1 binding were required to activate Mis18α-Mis18β and promote Mis18 complex-HJURP interaction. Thus, our study reveals key molecular events underpinning the licensing role of PLK1 in ensuring accurate centromere inheritance.


  • Organizational Affiliation: 
    • Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK.

Macromolecule Content 

  • Total Structure Weight: 28.76 kDa 
  • Atom Count: 1,833 
  • Modeled Residue Count: 215 
  • Deposited Residue Count: 249 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Serine/threonine-protein kinase PLK1242Homo sapiensMutation(s): 0 
Gene Names: PLK1, PLK
EC: 2.7.11.21
UniProt & NIH Common Fund Data Resources
Find proteins for P53350 (Homo sapiens)
Explore P53350 
Go to UniProtKB:  P53350
PHAROS:  P53350
GTEx:  ENSG00000166851 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP53350
Sequence Annotations
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Reference Sequence
Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Protein Mis18-alpha7Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NYP9 (Homo sapiens)
Explore Q9NYP9 
Go to UniProtKB:  Q9NYP9
PHAROS:  Q9NYP9
GTEx:  ENSG00000159055 
Entity Groups
UniProt GroupQ9NYP9
Sequence Annotations
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Reference Sequence

Small Molecules

Modified Residues  1 Unique
IDChains Modified ResidueModification TypeFormula2D Diagram
SEP
Query on SEP
SERPhosphorylationC3 H8 N O6 P

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free:  0.271 (Depositor), 0.274 (DCC) 
  • R-Value Work:  0.217 (Depositor), 0.217 (DCC) 
  • R-Value Observed: 0.219 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 43.138α = 90
b = 56.568β = 115.74
c = 49.576γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXrefinement
XDSdata reduction
xia2data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (MRC, United Kingdom)United KingdomMR/X001245/1

Revision History  (Full details and data files)

  • Version 1.0: 2024-08-21
    Type: Initial release
  • Version 1.1: 2024-09-18
    Changes: Database references
  • Version 1.2: 2024-11-13
    Changes: Structure summary