8RLM | pdb_00008rlm

TRIF Oligomerisation


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Toll-like receptor signaling outcome is determined by the stoichiometry of the endogenous TRIFosome.

Moncrieffe, M.C.Suresh, P.Boyle, J.Cui, Y.Nawalpuri, B.Verstak, B.Zhang, Y.P.Zhang, Z.Taylor, M.Egelman, E.H.Gay, N.Klenerman, D.Bryant, C.

(2026) Sci Adv 12: eaeb9507-eaeb9507

  • DOI: https://doi.org/10.1126/sciadv.aeb9507
  • Primary Citation of Related Structures:  
    8RLM

  • PubMed Abstract: 

    Toll-like receptors (TLRs) drive innate immunity via assembly of macromolecular signal transduction platforms [supramolecular organizing centers (SMOCs)] coordinated by adaptor proteins such as Toll/interleukin-1 receptor (IL-1R) domain-containing adaptor-inducing interferon-β (TRIF), but whether oligomeric TRIFosomes form is unknown. Here, using cryo-electron microscopy and biophysical characterization of full-length TRIF in vitro, we show that it forms filamentous oligomers, which associate with the TRIF signaling partners receptor interacting protein 1 (RIP1) and RIP3 kinases, suggesting that oligomeric TRIFosomes could form. Endogenous TRIF, however, is predominantly monomeric in the absence of ligand, only forming TRIFosome oligomers in macrophages after stimulation of TLR4 or TLR3 when large, macromolecular signaling complexes form. TRIFosomes are fully formed 45 min after TLR3 or 60 min after TLR4 stimulation, commensurate with activation of nuclear factor κB in these cells. TLR3/4 activation triggers rapid interferon signaling prior to TRIFosome formation through monomeric TRIF, unexpectedly suggesting that a macromolecular platform of TRIF is not required to drive this signaling pathway. Collectively, these data show TRIFosome macromolecular platform formation and, unexpectedly, that TLR signaling can be SMOC-independent in addition to being SMOC-dependent.


  • Organizational Affiliation
    • Department of Biochemistry, University of Cambridge, Cambridge, UK.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
TIR domain-containing adapter molecule 1
A, B, C, D, E
A, B, C, D, E, F
721Homo sapiensMutation(s): 0 
Gene Names: TICAM1PRVTIRBTRIF
UniProt & NIH Common Fund Data Resources
Find proteins for Q8IUC6 (Homo sapiens)
Explore Q8IUC6 
Go to UniProtKB:  Q8IUC6
PHAROS:  Q8IUC6
GTEx:  ENSG00000127666 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IUC6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4
MODEL REFINEMENTPHENIX(1.21rc1_5081

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-16
    Type: Initial release
  • Version 1.1: 2026-02-04
    Changes: Data collection, Database references
  • Version 1.2: 2026-03-18
    Changes: Data collection, Database references