8REY | pdb_00008rey

Cuniculiplasma divulgatum filament


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.61 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Unusual cell surfaces, pili, and archaella of Thermoplasmatales archaea.

Gaines, M.C.Isupov, M.N.McLaren, M.Haque, R.U.Recalde, A.Bargiela, R.Gold, V.A.M.Albers, S.V.Golyshin, P.N.Golyshina, O.V.Daum, B.

(2025) ISME J 19

  • DOI: https://doi.org/10.1093/ismejo/wraf176
  • Primary Citation of Related Structures:  
    8REY, 8RH5

  • PubMed Abstract: 

    Archaea of the order Thermoplasmatales push the boundaries of our current knowledge of prokaryotic life. They show distinct cellular plasticity, heterogenous cell morphologies, and lack a paracrystalline S-layer. As the S-layer has previously been implicated in acting as a stator scaffold for filaments driving cellular propulsion, particularly archaella, we asked whether the absence of an S-layer precludes the formation of functional archaella or pili in Thermoplasmatales. Using cryoEM, we investigated the two Thermoplasmatales species Cuniculiplasma divulgatum and Oxyplasma meridianum. We found that these species indeed generate pili and archaella, and that the latter likely function in cellular propulsion. Whereas C. divulgatum produces pili with terminal hooks using a unique assembly machinery, O. meridianum generates wide, "barbed" archaella with an unusually high degree of glycosylation. Our results show that, for the generation of functional archaella and pili, a canonical S-layer is not necessary.


  • Organizational Affiliation
    • Living Systems Institute, University of Exeter, EX4 4QD, Exeter, United Kingdom.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellin-like protein135Cuniculiplasma divulgatumMutation(s): 0 
UniProt
Find proteins for A0A1N5V6R6 (Cuniculiplasma divulgatum)
Explore A0A1N5V6R6 
Go to UniProtKB:  A0A1N5V6R6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1N5V6R6
Glycosylation
Glycosylation Sites: 2
Sequence Annotations
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  • Reference Sequence
Oligosaccharides

Help

Entity ID: 2
MoleculeChains Length2D Diagram Glycosylation3D Interactions
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-3)-[D-glycero-beta-D-galacto-heptopyranose-(1-2)]6-deoxy-6-sulfo-beta-D-galacto-heptopyranose-(1-4)-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose
AB [auth GA],
AC [auth 6A],
AD [auth wB],
BB [auth IA],
BC [auth 8A],
AB [auth GA],
AC [auth 6A],
AD [auth wB],
BB [auth IA],
BC [auth 8A],
BD [auth yB],
CB [auth KA],
CC [auth AB],
CD [auth 0B],
DB [auth MA],
DC [auth CB],
DD [auth 2B],
EB [auth OA],
EC [auth EB],
FB [auth QA],
FC [auth GB],
GB [auth SA],
GC [auth IB],
HB [auth UA],
HC [auth KB],
IB [auth WA],
IC [auth MB],
JB [auth YA],
JC [auth OB],
KA [auth k],
KB [auth aA],
KC [auth QB],
LA [auth m],
LB [auth cA],
LC [auth SB],
MA [auth o],
MB [auth eA],
MC [auth UB],
NA [auth q],
NB [auth gA],
NC [auth WB],
OA [auth s],
OB [auth iA],
OC [auth YB],
PA [auth u],
PB [auth kA],
PC [auth aB],
QA [auth w],
QB [auth mA],
QC [auth cB],
RA [auth y],
RB [auth oA],
RC [auth eB],
SA [auth 0],
SB [auth qA],
SC [auth gB],
TA [auth 2],
TB [auth sA],
TC [auth iB],
UA [auth 4],
UB [auth uA],
UC [auth kB],
VA [auth 6],
VB [auth wA],
VC [auth mB],
WA [auth 8],
WB [auth yA],
WC [auth oB],
XA [auth AA],
XB [auth 0A],
XC [auth qB],
YA [auth CA],
YB [auth 2A],
YC [auth sB],
ZA [auth EA],
ZB [auth 4A],
ZC [auth uB]
7N/AN-Glycosylation
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.61 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTREFMAC5.8.0267
MODEL REFINEMENTUCSF ChimeraX
MODEL REFINEMENTISOLDE

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union109784

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-01
    Type: Initial release
  • Version 1.1: 2025-09-17
    Changes: Data collection, Database references
  • Version 1.2: 2025-10-01
    Changes: Data collection, Database references