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 8RC6 | pdb_00008rc6

Cryo-EM structure of hexameric BTB domain of Drosophila CG6765 protein


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

Validation slider image for 8RC6

This is version 1.0 of the entry. See complete history. 

Literature

The Arthropoda-specific Tramtrack group BTB protein domains use previously unknown interface to form hexamers.

Bonchuk, A.N., Balagurov, K.I., Baradaran, R., Boyko, K.M., Sluchanko, N.N., Khrustaleva, A.M., Burtseva, A.D., Arkova, O.V., Khalisova, K.K., Popov, V.O., Naschberger, A., Georgiev, P.G.

(2024) Elife 13

  • DOI: https://doi.org/10.7554/eLife.96832
  • Primary Citation Related Structures: 
    8RC6

  • PubMed Abstract: 

    BTB (bric-a-brack, Tramtrack, and broad complex) is a diverse group of protein-protein interaction domains found within metazoan proteins. Transcription factors contain a dimerizing BTB subtype with a characteristic N-terminal extension. The Tramtrack group (TTK) is a distinct type of BTB domain, which can multimerize. Single-particle cryo-EM microscopy revealed that the TTK-type BTB domains assemble into a hexameric structure consisting of three canonical BTB dimers connected through a previously uncharacterized interface. We demonstrated that the TTK-type BTB domains are found only in Arthropods and have undergone lineage-specific expansion in modern insects. The Drosophila genome encodes 24 transcription factors with TTK-type BTB domains, whereas only four have non-TTK-type BTB domains. Yeast two-hybrid analysis revealed that the TTK-type BTB domains have an unusually broad potential for heteromeric associations presumably through a dimer-dimer interaction interface. Thus, the TTK-type BTB domains are a structurally and functionally distinct group of protein domains specific to Arthropodan transcription factors.


  • Organizational Affiliation: 
    • Department of the Control of Genetic Processes, Institute of Gene Biology Russian Academy of Sciences, Moscow, Russian Federation.

Macromolecule Content 

  • Total Structure Weight: 87.26 kDa 
  • Atom Count: 6,118 
  • Modeled Residue Count: 780 
  • Deposited Residue Count: 786 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
BTB domain of CG6765 protein
A, B, C, D, E
A, B, C, D, E, F
131Drosophila melanogasterMutation(s): 0 
Gene Names: Dmel\CG6765, CG6765, Dmel_CG6765
UniProt
Find proteins for Q9VSL1 (Drosophila melanogaster)
Explore Q9VSL1 
Go to UniProtKB:  Q9VSL1
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VSL1
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONRELION5.0

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Russian Science FoundationRussian Federation19-74-10099

Revision History  (Full details and data files)

  • Version 1.0: 2024-09-11
    Type: Initial release