8R8R

Cryo-EM structure of the human mPSF with PAPOA C-terminus peptide (PAPOAc)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.79 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Molecular basis of human polyA polymerase recruitment by mPSF.

Todesca, S.Sandmeir, F.Keidel, A.Conti, E.

(2024) RNA 

  • DOI: https://doi.org/10.1261/rna.079915.123
  • Primary Citation of Related Structures:  
    8R8R

  • PubMed Abstract: 

    3' end processing of most eukaryotic pre-mRNAs is a crucial co-transcriptional process that generally involves the cleavage and polyadenylation of the precursor transcripts. Within the human 3' end processing machinery, the 4-subunit mammalian polyadenylation specificity factor (mPSF) recognizes the polyadenylation signal (PAS) in the pre-mRNA and recruits the polyA polymerase α (PAPOA) to it. To shed light on the molecular mechanisms of PAPOA recruitment to mPSF, we used a combination of cryogenic-electron microscopy (cryo-EM) single-particle analysis, computational structure prediction and in vitro biochemistry to reveal an intricate interaction network. A short linear motif in the mPSF subunit FIP1 interacts with the structured core of human PAPOA, with a binding mode that is evolutionary conserved from yeast to human. In higher eukaryotes, however, PAPOA contains a conserved C-terminal motif that can interact intramolecularly with the same residues of the PAPOA structured core used to bind FIP1. Interestingly, using biochemical assay and cryo-EM structural analysis, we found that the PAPOA C-terminal motif can also directly interact with mPSF at the subunit CPSF160. These results show that PAPOA recruitment to mPSF is mediated by two distinct intermolecular connections and further suggest the presence of mutually exclusive interactions in the regulation of 3' end processing.


  • Organizational Affiliation

    MPI of Biochemistry.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cleavage and polyadenylation specificity factor subunit 11,443Homo sapiensMutation(s): 0 
Gene Names: CPSF1
UniProt & NIH Common Fund Data Resources
Find proteins for Q10570 (Homo sapiens)
Explore Q10570 
Go to UniProtKB:  Q10570
PHAROS:  Q10570
GTEx:  ENSG00000071894 
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UniProt GroupQ10570
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
pre-mRNA 3' end processing protein WDR33413Homo sapiensMutation(s): 0 
Gene Names: WDR33
UniProt & NIH Common Fund Data Resources
Find proteins for Q9C0J8 (Homo sapiens)
Explore Q9C0J8 
Go to UniProtKB:  Q9C0J8
PHAROS:  Q9C0J8
GTEx:  ENSG00000136709 
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UniProt GroupQ9C0J8
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Cleavage and polyadenylation specificity factor subunit 4285Homo sapiensMutation(s): 0 
Gene Names: CPSF4
UniProt & NIH Common Fund Data Resources
Find proteins for O95639 (Homo sapiens)
Explore O95639 
Go to UniProtKB:  O95639
PHAROS:  O95639
GTEx:  ENSG00000160917 
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UniProt GroupO95639
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
cDNA FLJ50397, highly similar to Poly(A) polymerase alpha26Homo sapiensMutation(s): 0 
UniProt
Find proteins for B4DZL2 (Homo sapiens)
Explore B4DZL2 
Go to UniProtKB:  B4DZL2
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UniProt GroupB4DZL2
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  • Reference Sequence

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Entity ID: 5
MoleculeChains LengthOrganismImage
RNA (5'-R(P*AP*AP*UP*AP*AP*A)-3')6Homo sapiens
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.79 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Max Planck SocietyGermany--
European Research Council (ERC)European Union101054447
German Research Foundation (DFG)GermanySFB1035
Novo Nordisk FoundationDenmark31199

Revision History  (Full details and data files)

  • Version 1.0: 2024-04-10
    Type: Initial release