8R7J | pdb_00008r7j

Cryo-EM structure of the human TREX-2 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

An ATP-gated molecular switch orchestrates human messenger RNA export.

Hohmann, U.Graf, M.Tirian, L.Pacheco-Fiallos, B.Schellhaas, U.Fin, L.Handler, D.Philipps, A.W.Riabov-Bassat, D.Faraway, R.W.Puhringer, T.Szalay, M.F.Roitinger, E.Brennecke, J.Plaschka, C.

(2025) Nature 

  • DOI: https://doi.org/10.1038/s41586-025-09832-z
  • Primary Citation of Related Structures:  
    8R7J, 8R7K, 8R7L

  • PubMed Abstract: 

    The nuclear export of messenger RNA (mRNA) is an important step in eukaryotic gene expression 1 . Despite recent molecular insights into how newly transcribed mRNAs are packaged into ribonucleoprotein complexes (mRNPs) 2,3 , the subsequent events that govern mRNA export are poorly understood. Here, we uncover the molecular basis underlying key events of human mRNA export, including the remodeling of mRNP-bound transcription-export complexes (TREX), the formation of export-competent mRNPs, the docking of mRNPs at the nuclear pore complex (NPC), and the release of mRNPs at the NPC to initiate their export. Our biochemical and structural data show that the ATPase DDX39/UAP56 acts as a central molecular switch that directs nucleoplasmic mRNPs from TREX to NPC-anchored TREX-2 complexes through its ATP-gated mRNA-binding cycle. Collectively, these findings establish a mechanistic framework for a general and evolutionarily conserved mRNA export pathway.


  • Organizational Affiliation
    • Research Institute of Molecular Pathology (IMP), Vienna BioCenter (VBC), Vienna, Austria. u.hohmann@imb-mainz.de.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Germinal-center associated nuclear protein423Homo sapiensMutation(s): 0 
Gene Names: MCM3APGANPKIAA0572MAP80
EC: 2.3.1.48 (PDB Primary Data), 2.3.1 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for O60318 (Homo sapiens)
Explore O60318 
Go to UniProtKB:  O60318
PHAROS:  O60318
GTEx:  ENSG00000160294 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO60318
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
PCI domain-containing protein 2399Homo sapiensMutation(s): 0 
Gene Names: PCID2HT004
UniProt & NIH Common Fund Data Resources
Find proteins for Q5JVF3 (Homo sapiens)
Explore Q5JVF3 
Go to UniProtKB:  Q5JVF3
PHAROS:  Q5JVF3
GTEx:  ENSG00000126226 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5JVF3
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
26S proteasome complex subunit SEM170Homo sapiensMutation(s): 0 
Gene Names: SEM1C7orf76DSS1SHFDG1SHFM1
UniProt & NIH Common Fund Data Resources
Find proteins for P60896 (Homo sapiens)
Explore P60896 
Go to UniProtKB:  P60896
PHAROS:  P60896
GTEx:  ENSG00000127922 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP60896
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union949081
H2020 Marie Curie Actions of the European CommissionEuropean Union896416
European Molecular Biology Organization (EMBO)European UnionALTF_1175-2019

Revision History  (Full details and data files)

  • Version 1.0: 2025-06-11
    Type: Initial release
  • Version 1.1: 2025-11-26
    Changes: Data collection, Database references