8QZO | pdb_00008qzo

Crystal structure of heterodimeric complex of CdpB1 and CdpB2 from A. fulgidus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 
    0.279 (Depositor), 0.280 (DCC) 
  • R-Value Work: 
    0.231 (Depositor), 0.230 (DCC) 
  • R-Value Observed: 
    0.234 (Depositor) 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


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Literature

Proteins containing photosynthetic reaction centre domains modulate FtsZ-based archaeal cell division.

Nussbaum, P.Kureisaite-Ciziene, D.Bellini, D.van der Does, C.Kojic, M.Taib, N.Yeates, A.Tourte, M.Gribaldo, S.Loose, M.Lowe, J.Albers, S.V.

(2024) Nat Microbiol 9: 698-711

  • DOI: https://doi.org/10.1038/s41564-024-01600-5
  • Primary Citation of Related Structures:  
    8ONW, 8QZO

  • PubMed Abstract: 

    Cell division in all domains of life requires the orchestration of many proteins, but in Archaea most of the machinery remains poorly characterized. Here we investigate the FtsZ-based cell division mechanism in Haloferax volcanii and find proteins containing photosynthetic reaction centre (PRC) barrel domains that play an essential role in archaeal cell division. We rename these proteins cell division protein B 1 (CdpB1) and CdpB2. Depletions and deletions in their respective genes cause severe cell division defects, generating drastically enlarged cells. Fluorescence microscopy of tagged FtsZ1, FtsZ2 and SepF in CdpB1 and CdpB2 mutant strains revealed an unusually disordered divisome that is not organized into a distinct ring-like structure. Biochemical analysis shows that SepF forms a tripartite complex with CdpB1/2 and crystal structures suggest that these two proteins might form filaments, possibly aligning SepF and the FtsZ2 ring during cell division. Overall our results indicate that PRC-domain proteins play essential roles in FtsZ-based cell division in Archaea.


  • Organizational Affiliation
    • Molecular Biology of Archaea, Microbiology, Faculty of Biology, University of Freiburg, Freiburg, Germany.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PRC-barrel domain-containing proteinA,
B,
C [auth D],
D [auth F]
182Archaeoglobus fulgidusMutation(s): 0 
Gene Names: XD40_0572XD40_0428
UniProt
Find proteins for O28740 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16))
Explore O28740 
Go to UniProtKB:  O28740
Find proteins for O29888 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16))
Explore O29888 
Go to UniProtKB:  O29888
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsO29888O28740
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free:  0.279 (Depositor), 0.280 (DCC) 
  • R-Value Work:  0.231 (Depositor), 0.230 (DCC) 
  • R-Value Observed: 0.234 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 71.086α = 90
b = 102.633β = 90
c = 112.323γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
REFMACrefinement
AutoProcessdata reduction
XDSdata scaling
MOLREPphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (MRC, United Kingdom)United Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2024-04-03
    Type: Initial release