CryoEM structure of the type IV pilin PilA4 from Thermus thermophilus
Gold, V.A.M., Neuhaus, A., Gaines, M., Isupov, M.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
| 2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose | BB [auth PA], BC [auth 5B], BD [auth lD], BE [auth RF], DB [auth XA], BB [auth PA], BC [auth 5B], BD [auth lD], BE [auth RF], DB [auth XA], DC, DD [auth tD], DE [auth ZF], FB [auth fA], FC [auth LC], FD [auth 1D], HB [auth nA], HC [auth TC], HD [auth 9D], JB [auth vA], JC [auth bC], JD [auth HE], LB [auth 3A], LC [auth jC], LD [auth PE], NB [auth BB], NC [auth rC], ND [auth XE], PB [auth JB], PC [auth zC], PD [auth fE], RB, RC [auth 7C], RD [auth nE], TA [auth t], TB [auth ZB], TC [auth FD], TD [auth vE], VA [auth 1], VB [auth hB], VC [auth ND], VD [auth 3E], XA [auth 9], XB [auth pB], XC [auth VD], XD [auth BF], ZA [auth HA], ZB [auth xB], ZC [auth dD], ZD [auth JF] | 2 | O-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G00039MO GlyCosmos:  G00039MO GlyGen:  G00039MO | |||||
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
| 7-Acetamido-5-acetimidoyl-3,5,7,9-tetradeoxy-L-glycero-L-manno-nonulosonic aci-(1-4)-alpha-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose | AB [auth KA], AC [auth 0B], AD [auth gD], AE [auth MF], CB [auth SA], AB [auth KA], AC [auth 0B], AD [auth gD], AE [auth MF], CB [auth SA], CC [auth 8B], CD [auth oD], CE [auth UF], EB [auth aA], EC [auth GC], ED [auth wD], EE [auth cF], GB [auth iA], GC [auth OC], GD [auth 4D], IB [auth qA], IC [auth WC], ID [auth CE], KB [auth yA], KC [auth eC], KD [auth KE], MB [auth 6A], MC [auth mC], MD [auth SE], OB [auth EB], OC [auth uC], OD [auth aE], QB [auth MB], QC [auth 2C], QD [auth iE], SB [auth UB], SC [auth AD], SD [auth qE], UA [auth w], UB [auth cB], UC [auth ID], UD [auth yE], WA [auth 4], WB [auth kB], WC [auth QD], WD [auth 6E], YA [auth CA], YB [auth sB], YC [auth YD], YD [auth EF] | 4 | N/A | O-Glycosylation | |
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| A2G Query on A2G | AF [auth J] AG [auth W] AH [auth k] CF [auth K] CG [auth X] | 2-acetamido-2-deoxy-alpha-D-galactopyranose C8 H15 N O6 OVRNDRQMDRJTHS-CBQIKETKSA-N | |||
| MAN Query on MAN | BF [auth K] BG [auth X] BH [auth l] DF [auth L] DG [auth Y] | alpha-D-mannopyranose C6 H12 O6 WQZGKKKJIJFFOK-PQMKYFCFSA-N | |||
| Task | Software Package | Version |
|---|---|---|
| MODEL REFINEMENT | REFMAC | 5 |
| RECONSTRUCTION | cryoSPARC | 4.4 |
| Funding Organization | Location | Grant Number |
|---|---|---|
| Biotechnology and Biological Sciences Research Council (BBSRC) | United Kingdom | BB/R008639/1 |