8QJ1 | pdb_00008qj1

Cryo-EM structure of human islet amyloid polypeptide (hIAPP) mutant A25P, polymorph 1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.06 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 2.1 of the entry. See complete history


Literature

Cryo-EM exposes diverse polymorphism in IAPP mutants to guide the rational design of peptide-based therapeutics.

Ooi, S.A.Valli, D.Kuska, M.I.Mari, H.Chaudhary, H.Wahlgren, W.Y.Westenhoff, S.Tietze, A.A.Novials, A.Servitja, J.M.Maj, M.

(2025) J Mol Biology 437: 169405-169405

  • DOI: https://doi.org/10.1016/j.jmb.2025.169405
  • Primary Citation of Related Structures:  
    8QJ1, 8QVP, 8QVQ, 8RM8, 8RM9

  • PubMed Abstract: 

    In the pursuit of potential therapeutic agents for type 2 diabetes, non-amyloidogenic forms of the human Islet Amyloid Polypeptide (hIAPP) containing site-specific mutations are of significant interest. In the present study, we dissect the three proline mutations present in the core region of the non-amyloidogenic rat IAPP into single-point mutations at A25P, S28P, and S29P sites. We apply high-resolution cryo-electron microscopy and solve the structures of 6 polymorphs formed by these mutants, revealing the peptide's self-assembly patterns and identifying critical interactions that reinforce these structures in the presence of the β-sheet breaker. A unique trimeric aggregate with C3 symmetry was identified in the A25P mutant, which we resolved with a 3.05 Å resolution, while asymmetric trimeric assemblies were observed in the other mutants. Guided by the high-resolution structural models of A25P and S28P fibrils obtained in our study, we successfully designed novel non-amyloidogenic mutants of IAPP with potential therapeutic value. Our findings demonstrate the immense potential of structure-based approaches in developing effective therapeutics against amyloid diseases.


  • Organizational Affiliation
    • Department of Chemistry and Molecular Biology, Medicinaregatan 7B, Gothenburg 413 90, Sweden.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Islet amyloid polypeptide
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O
38Homo sapiensMutation(s): 2 
UniProt & NIH Common Fund Data Resources
Find proteins for P10997 (Homo sapiens)
Explore P10997 
Go to UniProtKB:  P10997
PHAROS:  P10997
GTEx:  ENSG00000121351 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP10997
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.06 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONRELION4.0.0

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swedish Research CouncilSwedenVR 2020-05403
Other privateSwedish Society for Medical Research (S20-0156)

Revision History  (Full details and data files)

  • Version 1.0: 2025-05-21
    Type: Initial release
  • Version 2.0: 2025-07-30
    Type: Coordinate replacement
    Reason: Atomic clashes
    Changes: Atomic model, Data collection, Derived calculations, Structure summary
  • Version 2.1: 2026-02-11
    Changes: Data collection, Database references