8Q6O

X. laevis CMG dimer bound to dimeric DONSON - without ATPase

  • Classification: REPLICATION
  • Organism(s): Xenopus laevis
  • Mutation(s): No 

  • Deposited: 2023-08-14 Released: 2023-10-18 
  • Deposition Author(s): Butryn, A., Cvetkovic, M.A., Costa, A.
  • Funding Organization(s): The Francis Crick Institute, European Research Council (ERC), Marie Sklodowska-Curie Actions, FragNET ITN, Wellcome Trust, Biotechnology and Biological Sciences Research Council (BBSRC)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.14 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The structural mechanism of dimeric DONSON in replicative helicase activation.

Cvetkovic, M.A.Passaretti, P.Butryn, A.Reynolds-Winczura, A.Kingsley, G.Skagia, A.Fernandez-Cuesta, C.Poovathumkadavil, D.George, R.Chauhan, A.S.Jhujh, S.S.Stewart, G.S.Gambus, A.Costa, A.

(2023) Mol Cell 83: 4017

  • DOI: https://doi.org/10.1016/j.molcel.2023.09.029
  • Primary Citation of Related Structures:  
    8Q6O, 8Q6P

  • PubMed Abstract: 

    The MCM motor of the replicative helicase is loaded onto origin DNA as an inactive double hexamer before replication initiation. Recruitment of activators GINS and Cdc45 upon S-phase transition promotes the assembly of two active CMG helicases. Although work with yeast established the mechanism for origin activation, how CMG is formed in higher eukaryotes is poorly understood. Metazoan Downstream neighbor of Son (DONSON) has recently been shown to deliver GINS to MCM during CMG assembly. What impact this has on the MCM double hexamer is unknown. Here, we used cryoelectron microscopy (cryo-EM) on proteins isolated from replicating Xenopus egg extracts to identify a double CMG complex bridged by a DONSON dimer. We find that tethering elements mediating complex formation are essential for replication. DONSON reconfigures the MCM motors in the double CMG, and primordial dwarfism patients' mutations disrupting DONSON dimerization affect GINS and MCM engagement in human cells and DNA synthesis in Xenopus egg extracts.


  • Organizational Affiliation

    Macromolecular Machines Laboratory, The Francis Crick Institute, London NW1 1AT, UK.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication licensing factor mcm2A,
R [auth 2]
886Xenopus laevisMutation(s): 0 
EC: 3.6.4.12
UniProt
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Maternal DNA replication licensing factor mcm3B,
S [auth 3]
807Xenopus laevisMutation(s): 0 
EC: 3.6.4.12
UniProt
Find proteins for P49739 (Xenopus laevis)
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication licensing factor mcm4-BC,
T [auth 4]
863Xenopus laevisMutation(s): 0 
EC: 3.6.4.12
UniProt
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication licensing factor mcm5-AD,
U [auth 5]
735Xenopus laevisMutation(s): 0 
EC: 3.6.4.12
UniProt
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Maternal DNA replication licensing factor mcm6E,
V [auth 6]
821Xenopus laevisMutation(s): 0 
EC: 3.6.4.12
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication licensing factor mcm7-BF,
W [auth 7]
720Xenopus laevisMutation(s): 0 
EC: 3.6.4.12
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication complex GINS protein PSF1G [auth M],
M [auth G]
196Xenopus laevisMutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication complex GINS protein PSF2H [auth N],
O [auth H]
185Xenopus laevisMutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication complex GINS protein PSF3I [auth O],
P [auth I]
210Xenopus laevisMutation(s): 0 
UniProt
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Cell division control protein 45 homologJ [auth P],
Q [auth J]
567Xenopus laevisMutation(s): 0 
UniProt
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication complex GINS protein SLD5K [auth Q],
N [auth K]
221Xenopus laevisMutation(s): 0 
UniProt
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Protein downstream neighbor of son homologL [auth R],
X [auth L]
579Xenopus laevisMutation(s): 0 
UniProt
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.14 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
The Francis Crick InstituteUnited KingdomFC001065
European Research Council (ERC)European Union820102
Marie Sklodowska-Curie Actions, FragNET ITNEuropean Union845939
Wellcome TrustUnited Kingdom215510/Z/19/Z
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/T001860/1

Revision History  (Full details and data files)

  • Version 1.0: 2023-10-18
    Type: Initial release
  • Version 1.1: 2023-10-25
    Changes: Database references
  • Version 1.2: 2023-11-29
    Changes: Database references