8Q4J

The crystal structure of human chloride intracellular channel protein 5 delta 57-68 F34D mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.51 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.241 
  • R-Value Observed: 0.243 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Chloride intracellular channel (CLIC) proteins function as fusogens.

Manori, B.Vaknin, A.Vankova, P.Nitzan, A.Zaidel-Bar, R.Man, P.Giladi, M.Haitin, Y.

(2024) Nat Commun 15: 2085-2085

  • DOI: https://doi.org/10.1038/s41467-024-46301-z
  • Primary Citation of Related Structures:  
    8Q4I, 8Q4J

  • PubMed Abstract: 

    Chloride Intracellular Channel (CLIC) family members uniquely transition between soluble and membrane-associated conformations. Despite decades of extensive functional and structural studies, CLICs' function as ion channels remains debated, rendering our understanding of their physiological role incomplete. Here, we expose the function of CLIC5 as a fusogen. We demonstrate that purified CLIC5 directly interacts with the membrane and induces fusion, as reflected by increased liposomal diameter and lipid and content mixing between liposomes. Moreover, we show that this activity is facilitated by acidic pH, a known trigger for CLICs' transition to a membrane-associated conformation, and that increased exposure of the hydrophobic inter-domain interface is crucial for this process. Finally, mutation of a conserved hydrophobic interfacial residue diminishes the fusogenic activity of CLIC5 in vitro and impairs excretory canal extension in C. elegans in vivo. Together, our results unravel the long-sought physiological role of these enigmatic proteins.


  • Organizational Affiliation

    Department of Physiology and Pharmacology, Faculty of Medicine, Tel-Aviv University, Tel-Aviv, 6997801, Israel.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Chloride intracellular channel protein 5A [auth B],
B [auth A]
228Homo sapiensMutation(s): 1 
Gene Names: CLIC5
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NZA1 (Homo sapiens)
Explore Q9NZA1 
Go to UniProtKB:  Q9NZA1
PHAROS:  Q9NZA1
GTEx:  ENSG00000112782 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NZA1
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
C [auth B]SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 129.688α = 90
b = 220.29β = 90
c = 45.478γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Israel Science FoundationIsrael1653/21

Revision History  (Full details and data files)

  • Version 1.0: 2024-03-20
    Type: Initial release