8PZG | pdb_00008pzg

Metagenomic lipase ORF17

PDB DOI: https://doi.org/10.2210/pdb8PZG/pdb

Classification: HYDROLASE
Organism(s): metagenome
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-07-27 Released: 2024-11-27
Deposition Author(s): Rangel Pereira, M., Balan, A., Hyvonen, M.
Funding Organization(s): Sao Paulo Research Foundation (FAPESP)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.40 Å
R-Value Free:
0.206 (Depositor), 0.206 (DCC)
R-Value Work:
0.163 (Depositor), 0.163 (DCC)
R-Value Observed:
0.165 (Depositor)

Starting Models: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Novel lipases isolated from metagenomic library

Rangel Pereira, M., Balan, A., Hyvonen, M.

To be published.

Macromolecule Content

Total Structure Weight: 68.05 kDa
Atom Count: 5,159
Modeled Residue Count: 596
Deposited Residue Count: 620
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ORF17	A, B	310	metagenome	Mutation(s): 0
UniProt
Find proteins for A0ACD6B8Z2 (uncultured bacterium) Explore A0ACD6B8Z2 Go to UniProtKB: A0ACD6B8Z2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0ACD6B8Z2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.40 Å
R-Value Free: 0.206 (Depositor), 0.206 (DCC)
R-Value Work: 0.163 (Depositor), 0.163 (DCC)
R-Value Observed: 0.165 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 43.98	α = 90
b = 74.95	β = 90
c = 159.44	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data scaling
XDS	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-11-27

Deposition Author(s):

Rangel Pereira, M.

Funding Organization	Location	Grant Number
Sao Paulo Research Foundation (FAPESP)	Brazil	--

Revision History (Full details and data files)

Version 1.0: 2024-11-27
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.