8PXD | pdb_00008pxd

Crystal structure of the C-terminal domain of Hh1412

• PDB DOI: https://doi.org/10.2210/pdb8PXD/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Helicobacter hepaticus ATCC 51449
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-07-23 Released: 2024-08-07 
• Deposition Author(s): Wilk, P., Orlikowska, M., Roszczenko-Jasinska, P., Jagusztyn-Krynicka, E.K.
• Funding Organization(s): Polish National Science Centre

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 
  0.250 (Depositor), 0.250 (DCC) 
• R-Value Work: 
  0.191 (Depositor), 0.190 (DCC) 
• R-Value Observed: 
  0.194 (Depositor) 

Starting Model: experimental

Literature

Crystal structures of Disulfide oxidoreductase/isomerase from Helicobacter hepaticus.

Roszczenko-Jasinska, P.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 24.35 kDa 
• Atom Count: 1,099 
• Modeled Residue Count: 133 
• Deposited Residue Count: 218 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Disulfide bond oxidoreductase/isomerase - Dsb	A	218	Helicobacter hepaticus ATCC 51449	Mutation(s): 0  Gene Names: HH_1412
UniProt
Find proteins for Q7VGB0 (Helicobacter hepaticus (strain ATCC 51449 / 3B1)) Explore Q7VGB0  Go to UniProtKB:  Q7VGB0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free:  0.250 (Depositor), 0.250 (DCC) 
• R-Value Work:  0.191 (Depositor), 0.190 (DCC) 
• R-Value Observed: 0.194 (Depositor) 

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.7	α = 90
b = 64.48	β = 90
c = 119.54	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data scaling
MoRDa	phasing
XDS	data reduction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-08-07 
Deposition Author(s): Wilk, P., Orlikowska, M., Roszczenko-Jasinska, P., Jagusztyn-Krynicka, E.K.

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Funding Organization	Location	Grant Number
Polish National Science Centre	Poland	2018/29/B/NZ1/00140

Revision History  

• Version 1.0: 2024-08-07
  Type: Initial release