8PPR

Structure of the human outer kinetochore KMN network complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure of the human outer kinetochore KMN network complex.

Yatskevich, S.Yang, J.Bellini, D.Zhang, Z.Barford, D.

(2024) Nat Struct Mol Biol 

  • DOI: https://doi.org/10.1038/s41594-024-01249-y
  • Primary Citation of Related Structures:  
    8PPR

  • PubMed Abstract: 

    Faithful chromosome segregation requires robust, load-bearing attachments of chromosomes to the mitotic spindle, a function accomplished by large macromolecular complexes termed kinetochores. In most eukaryotes, the constitutive centromere-associated network (CCAN) complex of the inner kinetochore recruits to centromeres the ten-subunit outer kinetochore KMN network that comprises the KNL1C, MIS12C and NDC80C complexes. The KMN network directly attaches CCAN to microtubules through MIS12C and NDC80C. Here, we determined a high-resolution cryo-EM structure of the human KMN network. This showed an intricate and extensive assembly of KMN subunits, with the central MIS12C forming rigid interfaces with NDC80C and KNL1C, augmented by multiple peptidic inter-subunit connections. We also observed that unphosphorylated MIS12C exists in an auto-inhibited state that suppresses its capacity to interact with CCAN. Ser100 and Ser109 of the N-terminal segment of the MIS12C subunit Dsn1, two key targets of Aurora B kinase, directly stabilize this auto-inhibition. Our study indicates how selectively relieving this auto-inhibition through Ser100 and Ser109 phosphorylation might restrict outer kinetochore assembly to functional centromeres during cell division.


  • Organizational Affiliation

    MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, UK. yatskevs@gene.com.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Kinetochore-associated protein DSN1 homologA [auth D]356Homo sapiensMutation(s): 0 
Gene Names: DSN1C20orf172MIS13
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Find proteins for Q9H410 (Homo sapiens)
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Go to UniProtKB:  Q9H410
PHAROS:  Q9H410
GTEx:  ENSG00000149636 
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UniProt GroupQ9H410
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Protein MIS12 homologB [auth M]205Homo sapiensMutation(s): 0 
Gene Names: MIS12
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Find proteins for Q9H081 (Homo sapiens)
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PHAROS:  Q9H081
GTEx:  ENSG00000167842 
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UniProt GroupQ9H081
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Kinetochore-associated protein NSL1 homologC [auth N]281Homo sapiensMutation(s): 0 
Gene Names: NSL1C1orf48DC31DC8MIS14
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Find proteins for Q96IY1 (Homo sapiens)
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PHAROS:  Q96IY1
GTEx:  ENSG00000117697 
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UniProt GroupQ96IY1
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Polyamine-modulated factor 1D [auth P]205Homo sapiensMutation(s): 0 
Gene Names: PMF1
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Find proteins for Q6P1K2 (Homo sapiens)
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PHAROS:  Q6P1K2
GTEx:  ENSG00000160783 
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UniProt GroupQ6P1K2
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Kinetochore protein Spc24E [auth F]197Homo sapiensMutation(s): 0 
Gene Names: SPC24SPBC24
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Find proteins for Q8NBT2 (Homo sapiens)
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GTEx:  ENSG00000161888 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Kinetochore protein Spc25F [auth G]224Homo sapiensMutation(s): 0 
Gene Names: SPC25SPBC25AD024
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Find proteins for Q9HBM1 (Homo sapiens)
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PHAROS:  Q9HBM1
GTEx:  ENSG00000152253 
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UniProt GroupQ9HBM1
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Kinetochore scaffold 1G [auth K]2,342Homo sapiensMutation(s): 0 
Gene Names: KNL1CASC5KIAA1570
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Find proteins for Q8NG31 (Homo sapiens)
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PHAROS:  Q8NG31
GTEx:  ENSG00000137812 
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UniProt GroupQ8NG31
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
ZW10 interactorH [auth Z]277Homo sapiensMutation(s): 0 
Gene Names: ZWINT
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Find proteins for O95229 (Homo sapiens)
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PHAROS:  O95229
GTEx:  ENSG00000122952 
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UniProt GroupO95229
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.18.2_3874:

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
UK Research and Innovation (UKRI)United KingdomMC_UP_1201/6
Cancer Research UKUnited KingdomC576/A14109

Revision History  (Full details and data files)

  • Version 1.0: 2024-03-20
    Type: Initial release