8P3O

Full-length bacterial polysaccharide co-polymerase WzzE mutant R267A from E. coli. C4 symmetry


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Alternating L4 loop architecture of the bacterial polysaccharide co-polymerase WzzE.

Wiseman, B.Widmalm, G.Hogbom, M.

(2023) Commun Biol 6: 802-802

  • DOI: https://doi.org/10.1038/s42003-023-05157-7
  • Primary Citation of Related Structures:  
    8BHW, 8P3O, 8P3P

  • PubMed Abstract: 

    Lipopolysaccharides such as the enterobacterial common antigen are important components of the enterobacterial cell envelope that act as a protective barrier against the environment and are often polymerized by the inner membrane bound Wzy-dependent pathway. By employing cryo-electron microscopy we show that WzzE, the co-polymerase component of this pathway that is responsible for the length modulation of the enterobacterial common antigen, is octameric with alternating up-down conformations of its L4 loops. The alternating up-down nature of these essential loops, located at the top of the periplasmic bell, are modulated by clashing helical faces between adjacent protomers that flank the L4 loops around the octameric periplasmic bell. This alternating arrangement and a highly negatively charged binding face create a dynamic environment in which the polysaccharide chain is extended, and suggest a ratchet-type mechanism for polysaccharide elongation.


  • Organizational Affiliation

    Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden. benjamin.wiseman@dbb.su.se.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ECA polysaccharide chain length modulation protein363Escherichia coli K-12Mutation(s): 0 
Gene Names: wzzEwzzyifCb3785JW5601
Membrane Entity: Yes 
UniProt
Find proteins for P0AG00 (Escherichia coli (strain K12))
Explore P0AG00 
Go to UniProtKB:  P0AG00
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0AG00
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC3
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swedish Research CouncilSweden2017-04018
Knut and Alice Wallenberg FoundationSweden2017.0275
Knut and Alice Wallenberg FoundationSweden2019.0436

Revision History  (Full details and data files)

  • Version 1.0: 2023-07-26
    Type: Initial release
  • Version 1.1: 2023-08-09
    Changes: Database references