8OZZ | pdb_00008ozz

PH domain of AKT-like kinase in Trypanosoma cruzi


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 10000 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural investigation of Trypanosoma cruzi Akt-like kinase as drug target against Chagas disease.

Stadler, K.A.Ortiz-Joya, L.J.Singh Sahrawat, A.Buhlheller, C.Gruber, K.Pavkov-Keller, T.O'Hagan, T.B.Guarne, A.Pulido, S.Marin-Villa, M.Zangger, K.Gubensak, N.

(2024) Sci Rep 14: 10039-10039

  • DOI: https://doi.org/10.1038/s41598-024-59654-8
  • Primary Citation of Related Structures:  
    8OZZ

  • PubMed Abstract: 

    According to the World Health Organization, Chagas disease (CD) is the most prevalent poverty-promoting neglected tropical disease. Alarmingly, climate change is accelerating the geographical spreading of CD causative parasite, Trypanosoma cruzi, which additionally increases infection rates. Still, CD treatment remains challenging due to a lack of safe and efficient drugs. In this work, we analyze the viability of T. cruzi Akt-like kinase (TcAkt) as drug target against CD including primary structural and functional information about a parasitic Akt protein. Nuclear Magnetic Resonance derived information in combination with Molecular Dynamics simulations offer detailed insights into structural properties of the pleckstrin homology (PH) domain of TcAkt and its binding to phosphatidylinositol phosphate ligands (PIP). Experimental data combined with Alpha Fold proposes a model for the mechanism of action of TcAkt involving a PIP-induced disruption of the intramolecular interface between the kinase and the PH domain resulting in an open conformation enabling TcAkt kinase activity. Further docking experiments reveal that TcAkt is recognized by human inhibitors PIT-1 and capivasertib, and TcAkt inhibition by UBMC-4 and UBMC-6 is achieved via binding to TcAkt kinase domain. Our in-depth structural analysis of TcAkt reveals potential sites for drug development against CD, located at activity essential regions.


  • Organizational Affiliation
    • Institute of Chemistry/Organic and Bioorganic Chemistry, University of Graz, Graz, Austria.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PH domain of Akt-like kinase in Trypanosoma cruzi114Trypanosoma cruziMutation(s): 0 
Gene Names: Tc00.1047053509047.110
UniProt
Find proteins for Q4D6D3 (Trypanosoma cruzi (strain CL Brener))
Explore Q4D6D3 
Go to UniProtKB:  Q4D6D3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ4D6D3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 10000 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Austrian Science FundAustriaFWF T-1239
Austrian Science FundAustriaDOC 50

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-08
    Type: Initial release