8ORR | pdb_00008orr

Outer membrane protein assembly factor BamB from Klebsiella pneumoniae

• PDB DOI: https://doi.org/10.2210/pdb8ORR/pdb

• Classification: PROTEIN BINDING
• Organism(s): Klebsiella pneumoniae
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2023-04-17 Released: 2024-04-24 
• Deposition Author(s): Song, H., Bolla, J.R.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.68 Å
• R-Value Free: 
  0.210 (Depositor), 0.218 (DCC) 
• R-Value Work: 
  0.171 (Depositor), 0.182 (DCC) 

Starting Model: experimental

Literature

Outer membrane protein assembly factor BamB from Klebsiella pneumoniae

Song, H., Bolla, J.R.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 39.5 kDa 
• Atom Count: 3,020 
• Modeled Residue Count: 349 
• Deposited Residue Count: 362 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer membrane protein assembly factor BamB	A [auth AAA]	362	Klebsiella pneumoniae	Mutation(s): 0  Gene Names: yfgL
UniProt
Find proteins for A0A0W8AU86 (Klebsiella pneumoniae) Explore A0A0W8AU86  Go to UniProtKB:  A0A0W8AU86

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CD (Subject of Investigation/LOI)	B [auth AAA], C [auth AAA], D [auth AAA], E [auth AAA], F [auth AAA], G [auth AAA]	CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.68 Å
• R-Value Free:  0.210 (Depositor), 0.218 (DCC) 
• R-Value Work:  0.171 (Depositor), 0.182 (DCC) 

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.095	α = 90
b = 50.095	β = 90
c = 259.774	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2024-04-24 
Deposition Author(s): Song, H., Bolla, J.R.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-04-24
  Type: Initial release