8OK2

Bipartite interaction of TOPBP1 with the GINS complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

TopBP1 utilises a bipartite GINS binding mode to support genome replication.

Day, M.Tetik, B.Parlak, M.Almeida-Hernandez, Y.Raschle, M.Kaschani, F.Siegert, H.Marko, A.Sanchez-Garcia, E.Kaiser, M.Barker, I.A.Pearl, L.H.Oliver, A.W.Boos, D.

(2024) Nat Commun 15: 1797-1797

  • DOI: https://doi.org/10.1038/s41467-024-45946-0
  • Primary Citation of Related Structures:  
    8OK2

  • PubMed Abstract: 

    Activation of the replicative Mcm2-7 helicase by loading GINS and Cdc45 is crucial for replication origin firing, and as such for faithful genetic inheritance. Our biochemical and structural studies demonstrate that the helicase activator GINS interacts with TopBP1 through two separate binding surfaces, the first involving a stretch of highly conserved amino acids in the TopBP1-GINI region, the second a surface on TopBP1-BRCT4. The two surfaces bind to opposite ends of the A domain of the GINS subunit Psf1. Mutation analysis reveals that either surface is individually able to support TopBP1-GINS interaction, albeit with reduced affinity. Consistently, either surface is sufficient for replication origin firing in Xenopus egg extracts and becomes essential in the absence of the other. The TopBP1-GINS interaction appears sterically incompatible with simultaneous binding of DNA polymerase epsilon (Polε) to GINS when bound to Mcm2-7-Cdc45, although TopBP1-BRCT4 and the Polε subunit PolE2 show only partial competitivity in binding to Psf1. Our TopBP1-GINS model improves the understanding of the recently characterised metazoan pre-loading complex. It further predicts the coordination of three molecular origin firing processes, DNA polymerase epsilon arrival, TopBP1 ejection and GINS integration into Mcm2-7-Cdc45.


  • Organizational Affiliation

    School of Biological and Behavioural Sciences, Blizard Institute, Queen Mary University of London, London, E1 2AT, UK. matthew.day@qmul.ac.uk.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication complex GINS protein PSF1151Homo sapiensMutation(s): 1 
Gene Names: GINS1KIAA0186PSF1
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PHAROS:  Q14691
GTEx:  ENSG00000101003 
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UniProt GroupQ14691
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication complex GINS protein PSF2185Homo sapiensMutation(s): 0 
Gene Names: GINS2PSF2CGI-122DC5HSPC037
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PHAROS:  Q9Y248
GTEx:  ENSG00000131153 
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UniProt GroupQ9Y248
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication complex GINS protein PSF3216Homo sapiensMutation(s): 0 
Gene Names: GINS3PSF3
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PHAROS:  Q9BRX5
GTEx:  ENSG00000181938 
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UniProt GroupQ9BRX5
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication complex GINS protein SLD5262Homo sapiensMutation(s): 0 
Gene Names: GINS4SLD5
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Find proteins for Q9BRT9 (Homo sapiens)
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PHAROS:  Q9BRT9
GTEx:  ENSG00000147536 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Topoisomerase (DNA) II binding protein 1470Homo sapiensMutation(s): 0 
Gene Names: TOPBP1
UniProt
Find proteins for A7E2X7 (Homo sapiens)
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UniProt GroupA7E2X7
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Cancer Research UKUnited Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2024-03-13
    Type: Initial release