Download MendeleyFirst crystal structure of beta-conglutin, a major lupin allergen from Lupinus albus seeds
Dolot, R.M., O'Sullivan, C.K., Jauset-Rubio, M.To be published.
8OFD
Crystal structure of beta-conglutin from Lupinus albus refined to 2.81 A
- PDB DOI: https://doi.org/10.2210/pdb8OFD/pdb
- Classification: ALLERGEN
- Organism(s): Lupinus albus
- Mutation(s): Yes
- Deposited: 2023-03-15 Released: 2023-06-14
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.81 Å
- R-Value Free: 0.277 (Depositor), 0.310 (DCC)
- R-Value Work: 0.204 (Depositor), 0.230 (DCC)
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Conglutin beta 1 | 423 | Lupinus albus | Mutation(s): 1 |  | |
UniProt | |||||
Find proteins for Q53HY0 (Lupinus albus) Explore Q53HY0 Go to UniProtKB: Q53HY0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q53HY0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACT Query on ACT | B [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| K Query on K | D [auth A] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
| NA Query on NA | C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.81 Å
- R-Value Free: 0.277 (Depositor), 0.310 (DCC)
- R-Value Work: 0.204 (Depositor), 0.230 (DCC)
Space Group: P 3 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 166.63 | α = 90 |
| b = 166.63 | β = 90 |
| c = 40.098 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| CrysalisPro | data reduction |
| Aimless | data scaling |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-06-14 Deposition Author(s): Dolot, R.M., O'Sullivan, C.K., Jauset-Rubio, M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-06-14
Type: Initial release - Version 1.1: 2024-06-19
Changes: Data collection
