8KHF

Structure of the human ATP synthase bound to bedaquiline (membrane domain)

  • Classification: MEMBRANE PROTEIN
  • Organism(s): Homo sapiens
  • Mutation(s): No 
  • Membrane Protein: Yes  PDBTM

  • Deposited: 2023-08-21 Released: 2024-05-01 
  • Deposition Author(s): Lai, Y., Zhang, Y.
  • Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.13 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Structure of Mycobacterium tuberculosis ATP synthase

Zhang, Y., Lai, Y., Liu, F., Rao, Z., Gong, H.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase F(0) complex subunit C1, mitochondrial75Homo sapiensMutation(s): 0 
Membrane Entity: Yes 
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Find proteins for P05496 (Homo sapiens)
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GTEx:  ENSG00000159199 
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UniProt GroupP05496
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit gamma, mitochondrialI [auth G]273Homo sapiensMutation(s): 0 
Membrane Entity: Yes 
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Find proteins for P36542 (Homo sapiens)
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PHAROS:  P36542
GTEx:  ENSG00000165629 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit delta, mitochondrialJ [auth H]146Homo sapiensMutation(s): 0 
Membrane Entity: Yes 
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Find proteins for P30049 (Homo sapiens)
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GTEx:  ENSG00000099624 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit epsilon, mitochondrialK [auth I]51Homo sapiensMutation(s): 0 
Membrane Entity: Yes 
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Find proteins for P56381 (Homo sapiens)
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GTEx:  ENSG00000124172 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase F(0) complex subunit B1, mitochondrialL [auth K]214Homo sapiensMutation(s): 0 
Membrane Entity: Yes 
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Find proteins for P24539 (Homo sapiens)
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PHAROS:  P24539
GTEx:  ENSG00000116459 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit d, mitochondrial160Homo sapiensMutation(s): 0 
Membrane Entity: Yes 
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Find proteins for O75947 (Homo sapiens)
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GTEx:  ENSG00000167863 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit a226Homo sapiensMutation(s): 0 
Membrane Entity: Yes 
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Find proteins for P00846 (Homo sapiens)
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GTEx:  ENSG00000198899 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit ATP5MJ, mitochondrialO [auth P]58Homo sapiensMutation(s): 0 
Membrane Entity: Yes 
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Find proteins for P56378 (Homo sapiens)
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GTEx:  ENSG00000156411 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase protein 8P [auth Q]68Homo sapiensMutation(s): 0 
Membrane Entity: Yes 
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Find proteins for P03928 (Homo sapiens)
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GTEx:  ENSG00000228253 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit f, mitochondrialQ [auth R]93Homo sapiensMutation(s): 0 
Membrane Entity: Yes 
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Find proteins for P56134 (Homo sapiens)
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GTEx:  ENSG00000241468 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit g, mitochondrialR [auth S]102Homo sapiensMutation(s): 0 
Membrane Entity: Yes 
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Find proteins for O75964 (Homo sapiens)
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GTEx:  ENSG00000167283 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
ATP synthase subunit e, mitochondrialS [auth T]69Homo sapiensMutation(s): 0 
Membrane Entity: Yes 
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Find proteins for P56385 (Homo sapiens)
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GTEx:  ENSG00000169020 
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Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
BQ1 (Subject of Investigation/LOI)
Query on BQ1
Download Ideal Coordinates CCD File 
T [auth 4]Bedaquiline
C32 H31 Br N2 O2
QUIJNHUBAXPXFS-XLJNKUFUSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.13 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China81520108019
National Natural Science Foundation of China (NSFC)China32100976
National Natural Science Foundation of China (NSFC)China82222042

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-01
    Type: Initial release