8K0D

Cryo-EM structure of conformation 2 of complex of Nipah virus attachment G with 1E5 neutralizing antibody


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.94 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

A potent Henipavirus cross-neutralizing antibody reveals a dynamic fusion-triggering pattern of the G-tetramer.

Fan, P.Sun, M.Zhang, X.Zhang, H.Liu, Y.Yao, Y.Li, M.Fang, T.Sun, B.Chen, Z.Chi, X.Chen, L.Peng, C.Chen, Z.Zhang, G.Ren, Y.Liu, Z.Li, Y.Li, J.Li, E.Guan, W.Li, S.Gong, R.Zhang, K.Yu, C.Chiu, S.

(2024) Nat Commun 15: 4330-4330

  • DOI: https://doi.org/10.1038/s41467-024-48601-w
  • Primary Citation of Related Structures:  
    8K0C, 8K0D

  • PubMed Abstract: 

    The Hendra and Nipah viruses (HNVs) are highly pathogenic pathogens without approved interventions for human use. In addition, the interaction pattern between the attachment (G) and fusion (F) glycoproteins required for virus entry remains unclear. Here, we isolate a panel of Macaca-derived G-specific antibodies that cross-neutralize HNVs via multiple mechanisms. The most potent antibody, 1E5, confers adequate protection against the Nipah virus challenge in female hamsters. Crystallography demonstrates that 1E5 has a highly similar binding pattern to the receptor. In cryo-electron microscopy studies, the tendency of 1E5 to bind to the upper or lower heads results in two distinct quaternary structures of G. Furthermore, we identify the extended outer loop β1S2-β1S3 of G and two pockets on the apical region of fusion (F) glycoprotein as the essential sites for G-F interactions. This work highlights promising drug candidates against HNVs and contributes deeper insights into the viruses.


  • Organizational Affiliation

    Laboratory of Advanced Biotechnology, Institute of Biotechnology, Beijing, China. fanpengfei93@163.com.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
The heavy chain of 1E5A [auth E],
D [auth C]
242Macaca mulattaMutation(s): 0 
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
The light chain of 1E5B [auth F],
E [auth D]
213Macaca mulattaMutation(s): 0 
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Glycoprotein GC [auth A],
F [auth B]
402Henipavirus nipahenseMutation(s): 0 
Gene Names: G
UniProt
Find proteins for Q9IH62 (Nipah virus)
Explore Q9IH62 
Go to UniProtKB:  Q9IH62
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UniProt GroupQ9IH62
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.94 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data

  • Released Date: 2024-05-01 
  • Deposition Author(s): Sun, M.

Funding OrganizationLocationGrant Number
Chinese Academy of SciencesChinaXDB0490000

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-01
    Type: Initial release
  • Version 1.1: 2024-06-05
    Changes: Database references