8JU3

Mu phage tail fiber

PDB DOI: https://doi.org/10.2210/pdb8JU3/pdb

Classification: VIRAL PROTEIN
Organism(s): Escherichia phage Mu
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2023-06-24 Released: 2024-02-28
Deposition Author(s): Yamashita, E., Takeda, S.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.215
R-Value Work: 0.198
R-Value Observed: 0.198

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Determination of three-dimensional structure of bacteriophase Mu tail fiber

Mori, Y., Yamashita, E., Nakagawa, A., Matsuzawa, T., Inagaki, M., Cui, L., Tanaka, S., Hatori, S., Takeda, S.

To be published.

Macromolecule Content

Total Structure Weight: 52.7 kDa
Atom Count: 2,435
Modelled Residue Count: 290
Deposited Residue Count: 488
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tail fiber protein S,Tail fiber protein S'	A	488	Escherichia phage Mu	Mutation(s): 0 Gene Names: S, Mup49, S', Mup52
UniProt
Find proteins for P0DJY6 (Escherichia phage Mu) Explore P0DJY6 Go to UniProtKB: P0DJY6
Find proteins for Q9T1V0 (Escherichia phage Mu) Explore Q9T1V0 Go to UniProtKB: Q9T1V0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Groups	P0DJY6Q9T1V0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.215
R-Value Work: 0.198
R-Value Observed: 0.198
Space Group: P 3 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.839	α = 90
b = 63.839	β = 90
c = 462.383	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-02-28

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2024-02-28
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.