8JGG

CryoEM structure of Gi-coupled MRGPRX1 with peptide agonist BAM8-22


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Ligand recognition and G protein coupling of the human itch receptor MRGPRX1.

Guo, L.Zhang, Y.Fang, G.Tie, L.Zhuang, Y.Xue, C.Liu, Q.Zhang, M.Zhu, K.You, C.Xu, P.Yuan, Q.Zhang, C.Liu, L.Rong, N.Peng, S.Liu, Y.Wang, C.Luo, X.Lv, Z.Kang, D.Yu, X.Zhang, C.Jiang, Y.Dong, X.Zhou, J.Liu, Z.Yang, F.Eric Xu, H.Sun, J.P.

(2023) Nat Commun 14: 5004-5004

  • DOI: https://doi.org/10.1038/s41467-023-40705-z
  • Primary Citation of Related Structures:  
    8JGB, 8JGF, 8JGG

  • PubMed Abstract: 

    MRGPRX1, a Mas-related GPCR (MRGPR), is a key receptor for itch perception and targeting MRGPRX1 may have potential to treat both chronic itch and pain. Here we report cryo-EM structures of the MRGPRX1-Gi1 and MRGPRX1-Gq trimers in complex with two peptide ligands, BAM8-22 and CNF-Tx2. These structures reveal a shallow orthosteric pocket and its conformational plasticity for sensing multiple different peptidic itch allergens. Distinct from MRGPRX2, MRGPRX1 contains a unique pocket feature at the extracellular ends of TM3 and TM4 to accommodate the peptide C-terminal "RF/RY" motif, which could serve as key mechanisms for peptidic allergen recognition. Below the ligand binding pocket, the G 6.48 XP 6.50 F 6.51 G 6.52 X (2) F/W 6.55 motif is essential for the inward tilting of the upper end of TM6 to induce receptor activation. Moreover, structural features inside the ligand pocket and on the cytoplasmic side of MRGPRX1 are identified as key elements for both Gi and Gq signaling. Collectively, our studies provide structural insights into understanding itch sensation, MRGPRX1 activation, and downstream G protein signaling.


  • Organizational Affiliation

    Advanced Medical Research Institute, Cheeloo College of Medicine, Shandong University, Jinan, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2A [auth G]60Homo sapiensMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
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Find proteins for P59768 (Homo sapiens)
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PHAROS:  P59768
GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
BAM8-22B [auth L]11Homo sapiensMutation(s): 0 
Membrane Entity: Yes 
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PHAROS:  P01210
GTEx:  ENSG00000181195 
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UniProt GroupP01210
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Single-Chain Fragment Variable 16C [auth S]285Homo sapiensMutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(i) subunit alpha-1D [auth A]354Homo sapiensMutation(s): 0 
Gene Names: GNAI1
Membrane Entity: Yes 
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GTEx:  ENSG00000127955 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1E [auth B]352Homo sapiensMutation(s): 0 
Gene Names: GNB1
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Find proteins for P62873 (Homo sapiens)
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PHAROS:  P62873
GTEx:  ENSG00000078369 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Mas-related G-protein coupled receptor member X1F [auth R]322Homo sapiensMutation(s): 0 
Gene Names: MRGPRX1MRGX1SNSR3SNSR4
Membrane Entity: Yes 
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GTEx:  ENSG00000170255 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China91939301
National Natural Science Foundation of China (NSFC)China32130022

Revision History  (Full details and data files)

  • Version 1.0: 2024-01-10
    Type: Initial release