8JEO | pdb_00008jeo

Crystal structure of TIGIT in complexed with Tiragolumab


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 
    0.205 (Depositor), 0.211 (DCC) 
  • R-Value Work: 
    0.172 (Depositor), 0.178 (DCC) 
  • R-Value Observed: 
    0.174 (Depositor) 

Starting Models: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

Structural insights into the unique pH-responsive characteristics of the anti-TIGIT therapeutic antibody Ociperlimab.

Sun, J.Zhang, X.Xue, L.Cheng, L.Zhang, J.Chen, X.Shen, Z.Li, K.Wang, L.Huang, C.Song, J.

(2024) Structure 32: 550

  • DOI: https://doi.org/10.1016/j.str.2024.02.009
  • Primary Citation Related Structures: 
    8JEL, 8JEN, 8JEO, 8JEP, 8JEQ

  • PubMed Abstract: 

    TIGIT is mainly expressed on T cells and is an inhibitory checkpoint receptor that binds to its ligand PVR in the tumor microenvironment. Anti-TIGIT monoclonal antibodies (mAbs) such as Ociperlimab and Tiragolumab block the TIGIT-PVR interaction and are in clinical development. However, the molecular blockade mechanism of these mAbs remains elusive. Here, we report the crystal structures of TIGIT in complex with Ociperlimab_Fab and Tiragolumab_Fab revealing that both mAbs bind TIGIT with a large steric clash with PVR. Furthermore, several critical epitopic residues are identified. Interestingly, the binding affinity of Ociperlimab toward TIGIT increases approximately 17-fold when lowering the pH from 7.4 to 6.0. Our structure shows a strong electrostatic interaction between ASP103 HCDR3 and HIS76 TIGIT explaining the pH-responsive mechanism of Ociperlimab. In contrast, Tiragolumab does not show an acidic pH-dependent binding enhancement. Our results provide valuable information that could help to improve the efficacy of therapeutic antibodies for cancer treatment.


  • Organizational Affiliation
    • Department of Biologics, BeiGene (Beijing) Co., Ltd, Beijing, China.

Macromolecule Content 

  • Total Structure Weight: 124.83 kDa 
  • Atom Count: 9,082 
  • Modeled Residue Count: 1,096 
  • Deposited Residue Count: 1,140 
  • Unique protein chains: 3

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
T-cell immunoreceptor with Ig and ITIM domains
A, D
115Homo sapiensMutation(s): 0 
Gene Names: TIGITVSIG9VSTM3
UniProt & NIH Common Fund Data Resources
Find proteins for Q495A1 (Homo sapiens)
Explore Q495A1 
Go to UniProtKB:  Q495A1
PHAROS:  Q495A1
GTEx:  ENSG00000181847 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ495A1
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
antibody heavy chain
B, E
235Homo sapiensMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
antibody light chain
C, F
220Homo sapiensMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free:  0.205 (Depositor), 0.211 (DCC) 
  • R-Value Work:  0.172 (Depositor), 0.178 (DCC) 
  • R-Value Observed: 0.174 (Depositor) 
Space Group: I 4
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 214.161α = 90
b = 214.161β = 90
c = 66.885γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-02-28
    Type: Initial release
  • Version 1.1: 2024-03-20
    Changes: Database references
  • Version 1.2: 2024-05-22
    Changes: Database references
  • Version 1.3: 2024-11-06
    Changes: Structure summary