8J46

Human Consensus Olfactory Receptor OR52c in apo state, OR52c-bRIL


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.66 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Understanding the molecular mechanisms of odorant binding and activation of the human OR52 family.

Choi, C.Bae, J.Kim, S.Lee, S.Kang, H.Kim, J.Bang, I.Kim, K.Huh, W.K.Seok, C.Park, H.Im, W.Choi, H.J.

(2023) Nat Commun 14: 8105-8105

  • DOI: https://doi.org/10.1038/s41467-023-43983-9
  • Primary Citation of Related Structures:  
    8HTG, 8HTI, 8J46, 8W77

  • PubMed Abstract: 

    Structural and mechanistic studies on human odorant receptors (ORs), key in olfactory signaling, are challenging because of their low surface expression in heterologous cells. The recent structure of OR51E2 bound to propionate provided molecular insight into odorant recognition, but the lack of an inactive OR structure limited understanding of the activation mechanism of ORs upon odorant binding. Here, we determined the cryo-electron microscopy structures of consensus OR52 (OR52 cs ), a representative of the OR52 family, in the ligand-free (apo) and octanoate-bound states. The apo structure of OR52 cs reveals a large opening between transmembrane helices (TMs) 5 and 6. A comparison between the apo and active structures of OR52 cs demonstrates the inward and outward movements of the extracellular and intracellular segments of TM6, respectively. These results, combined with molecular dynamics simulations and signaling assays, shed light on the molecular mechanisms of odorant binding and activation of the OR52 family.


  • Organizational Affiliation

    Department of Biological Sciences, Seoul National University, Seoul, 08826, Republic of Korea.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Olfactory receptor OR52c,Soluble cytochrome b562440Homo sapiensEscherichia coliMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P0ABE7 (Escherichia coli)
Explore P0ABE7 
Go to UniProtKB:  P0ABE7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0ABE7
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.66 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Samsung Science and Technology FoundationKorea, Republic OfSSTF-BA1901-09

Revision History  (Full details and data files)

  • Version 1.0: 2023-12-20
    Type: Initial release