8J2Q

Crystal structure of Cypovirus Polyhedra mutant fused with c-Myc fragment

• PDB DOI: https://doi.org/10.2210/pdb8J2Q/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Bombyx mori cypovirus 1, Homo sapiens
• Expression System: Triticum aestivum
• Mutation(s): No 


• Deposited: 2023-04-15 Released: 2024-04-17 
• Deposition Author(s): Kojima, M., Ueno, T., Abe, S., Hirata, K.
• Funding Organization(s): Japan Society for the Promotion of Science (JSPS)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.92 Å
• R-Value Free: 0.245 
• R-Value Work: 0.202 
• R-Value Observed: 0.206 

Literature

Screening system for structure determination of intrinsically disordered protein using cell-free protein crystallization

Kojima, M., Abe, S., Hirata, K., Ueno, T.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 28.33 kDa 
• Atom Count: 1,533 
• Modelled Residue Count: 191 
• Deposited Residue Count: 248 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Polyhedrin,Myc proto-oncogene protein	A	248	Bombyx mori cypovirus 1, Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P11041 (Bombyx mori cytoplasmic polyhedrosis virus) Explore P11041  Go to UniProtKB:  P11041
Find proteins for P01106 (Homo sapiens) Explore P01106  Go to UniProtKB:  P01106
PHAROS:  P01106 GTEx:  ENSG00000136997
UniProt Groups	P01106P11041

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.92 Å
• R-Value Free: 0.245 
• R-Value Work: 0.202 
• R-Value Observed: 0.206 
• Space Group: I 2 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 105.97	α = 90
b = 105.97	β = 90
c = 105.97	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XSCALE	data scaling
MOLREP	phasing
Coot	model building
XDS	data reduction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-04-17 
Deposition Author(s): Kojima, M., Ueno, T., Abe, S., Hirata, K.

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Funding Organization	Location	Grant Number
Japan Society for the Promotion of Science (JSPS)	Japan	--

Revision History  

• Version 1.0: 2024-04-17
  Type: Initial release