8J2N | pdb_00008j2n

Exopolysaccharide phosphotransferase CpsY in Mycobacterium tuberculosis

PDB DOI: https://doi.org/10.2210/pdb8J2N/pdb

Classification: TRANSFERASE
Organism(s): Mycobacterium tuberculosis H37Rv
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-04-14 Released: 2024-04-17
Deposition Author(s): Liu, D.F.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.64 Å
R-Value Free:
0.226 (Depositor), 0.226 (DCC)
R-Value Work:
0.203 (Depositor), 0.202 (DCC)
R-Value Observed:
0.204 (Depositor)

Starting Model: in silico
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This is version 1.0 of the entry. See complete history.

Literature

Exopolysaccharide phosphotransferase CpsY in Mycobacterium tuberculosis

Liu, D.F.

To be published.

Macromolecule Content

Total Structure Weight: 73.6 kDa
Atom Count: 4,255
Modeled Residue Count: 502
Deposited Residue Count: 640
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Exopolysaccharide phosphotransferase CpsY	A, B	320	Mycobacterium tuberculosis H37Rv	Mutation(s): 0 Gene Names: cpsY, Rv0806c EC: 2.7
UniProt
Find proteins for P9WGD1 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore P9WGD1 Go to UniProtKB: P9WGD1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P9WGD1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.64 Å
R-Value Free: 0.226 (Depositor), 0.226 (DCC)
R-Value Work: 0.203 (Depositor), 0.202 (DCC)
R-Value Observed: 0.204 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.88	α = 90
b = 41.73	β = 93.64
c = 100.44	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-04-17

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government	China	--

Revision History (Full details and data files)

Version 1.0: 2024-04-17
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.