8IYG

Human neuronal gap junction channel connexin 36


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.69 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Assembly mechanisms of the neuronal gap junction channel connexin 36 elucidated by Cryo-EM.

Mao, W.Chen, S.

(2024) Arch Biochem Biophys 754: 109959-109959

  • DOI: https://doi.org/10.1016/j.abb.2024.109959
  • Primary Citation of Related Structures:  
    8IYG

  • PubMed Abstract: 

    Electrical synapses are essential components of neural circuits. Neuronal signal transduction across electrical synapses is primarily mediated by gap junction channels composed of Connexin36 (Cx36), the lack of which causes impaired electrical coupling between certain neurons including cortical interneurons and thalamic reticular nucleus (TRN) neurons. However, the structural basis underlying Cx36 function and assembly remains elusive. Recently, Lee et al. reported cryo-EM structures of Cx36, thus provided first insights of its gating mechanism. Here, we report a consistent cryo-EM structure of Cx36 determined in parallel, and describe unique interactions underpinning its assembly mechanism in complementary to the competing work. In particular, we found non-canonical electrostatic interactions between protomers from opposing hemichannels and a steric complementary site between adjacent protomers within a hemichannel, which together provide a structural explanation for the assembly specificity in homomeric and heteromeric gap junction channels.


  • Organizational Affiliation

    Department of Otolaryngology-Head and Neck Surgery, Shanghai Ninth People's Hospital, Shanghai, China; Ear Institute, Shanghai Jiao Tong University School of Medicine, Shanghai, China; Shanghai Key Laboratory of Translational Medicine on Ear and Nose Diseases, Shanghai, China; Shanghai Institute of Precision Medicine, Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Gap junction delta-2 protein
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
321Homo sapiensMutation(s): 0 
Gene Names: GJD2GJA9
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UKL4 (Homo sapiens)
Explore Q9UKL4 
Go to UniProtKB:  Q9UKL4
PHAROS:  Q9UKL4
GTEx:  ENSG00000159248 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9UKL4
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
LMT (Subject of Investigation/LOI)
Query on LMT

Download Ideal Coordinates CCD File 
AA [auth B]
AB [auth D]
AD [auth I]
BA [auth B]
BD [auth I]
AA [auth B],
AB [auth D],
AD [auth I],
BA [auth B],
BD [auth I],
CA [auth B],
CC [auth G],
CD [auth I],
CE [auth K],
DA [auth B],
DB [auth D],
DC [auth G],
DD [auth I],
EA [auth B],
EC [auth G],
EE [auth L],
FC [auth G],
GB [auth E],
GC [auth G],
GD [auth I],
HA [auth B],
HB [auth E],
HC [auth G],
HE [auth L],
IB [auth E],
IE [auth L],
JB [auth E],
JD [auth J],
JE [auth L],
KA [auth C],
KB [auth E],
KC [auth G],
KD [auth J],
KE [auth L],
LA [auth C],
LB [auth E],
LD [auth J],
LE [auth L],
MA [auth C],
MD [auth J],
ME [auth L],
NA [auth C],
NC [auth H],
ND [auth J],
O [auth A],
OA [auth C],
OB [auth E],
OC [auth H],
OD [auth J],
P [auth A],
PA [auth C],
PC [auth H],
Q [auth A],
QB [auth F],
QC [auth H],
R [auth A],
RC [auth H],
RD [auth J],
S [auth A],
SA [auth C],
SC [auth H],
T [auth A],
TB [auth F],
UB [auth F],
UD [auth K],
VA [auth D],
VB [auth F],
VC [auth H],
VD [auth K],
W [auth A],
WA [auth D],
WB [auth F],
WD [auth K],
XA [auth D],
XB [auth F],
XD [auth K],
YA [auth D],
YB [auth F],
YC [auth I],
YD [auth K],
Z [auth B],
ZA [auth D],
ZC [auth I],
ZD [auth K]
DODECYL-BETA-D-MALTOSIDE
C24 H46 O11
NLEBIOOXCVAHBD-QKMCSOCLSA-N
Y01 (Subject of Investigation/LOI)
Query on Y01

Download Ideal Coordinates CCD File 
AC [auth G]
AE [auth K]
BB [auth D]
BC [auth G]
BE [auth K]
AC [auth G],
AE [auth K],
BB [auth D],
BC [auth G],
BE [auth K],
CB [auth D],
DE [auth L],
EB [auth E],
ED [auth I],
FA [auth B],
FB [auth E],
FD [auth I],
FE [auth L],
GA [auth B],
GE [auth L],
HD [auth J],
IA [auth C],
IC [auth G],
ID [auth J],
JA [auth C],
JC [auth G],
LC [auth H],
M [auth A],
MB [auth E],
MC [auth H],
N [auth A],
NB [auth E],
NE [auth L],
PB [auth F],
PD [auth J],
QA [auth C],
QD [auth J],
RA [auth C],
RB [auth F],
SB [auth F],
SD [auth K],
TA [auth D],
TC [auth H],
TD [auth K],
U [auth A],
UA [auth D],
UC [auth H],
V [auth A],
WC [auth I],
X [auth B],
XC [auth I],
Y [auth B],
ZB [auth F]
CHOLESTEROL HEMISUCCINATE
C31 H50 O4
WLNARFZDISHUGS-MIXBDBMTSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.69 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2024-04-10
    Type: Initial release