8IWS

hSPCA1 in the CaE2P state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.42 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure and transport mechanism of the human calcium pump SPCA1.

Wu, M.Wu, C.Song, T.Pan, K.Wang, Y.Liu, Z.

(2023) Cell Res 33: 533-545

  • DOI: https://doi.org/10.1038/s41422-023-00827-x
  • Primary Citation of Related Structures:  
    8IWP, 8IWR, 8IWS, 8IWT, 8IWU, 8IWW

  • PubMed Abstract: 

    Secretory-pathway Ca 2+ -ATPases (SPCAs) play critical roles in maintaining Ca 2+ homeostasis, but the exact mechanism of SPCAs-mediated Ca 2+ transport remains unclear. Here, we determined six cryo-electron microscopy (cryo-EM) structures of human SPCA1 (hSPCA1) in a series of intermediate states, revealing a near-complete conformational cycle. With the aid of molecular dynamics simulations, these structures offer a clear structural basis for Ca 2+ entry and release in hSPCA1. We found that hSPCA1 undergoes unique conformational changes during ATP binding and phosphorylation compared to other well-studied P-type II ATPases. In addition, we observed a conformational distortion of the Ca 2+ -binding site induced by the separation of transmembrane helices 4L and 6, unveiling a distinct Ca 2+ release mechanism. Particularly, we determined a structure of the long-sought CaE2P state of P-type IIA ATPases, providing valuable insights into the Ca 2+ transport cycle. Together, these findings enhance our understanding of Ca 2+ transport by hSPCA1 and broaden our knowledge of P-type ATPases.


  • Organizational Affiliation

    Department of Immunology and Microbiology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Calcium-transporting ATPase type 2C member 1919Homo sapiensMutation(s): 0 
Gene Names: ATP2C1KIAA1347PMR1LHUSSY-28
EC: 7.2.2.10
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P98194 (Homo sapiens)
Explore P98194 
Go to UniProtKB:  P98194
PHAROS:  P98194
GTEx:  ENSG00000017260 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP98194
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.42 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, China)China32000850

Revision History  (Full details and data files)

  • Version 1.0: 2023-12-27
    Type: Initial release