8ITE | pdb_00008ite

Crystal structure of pE301R from African swine fever virus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 
    0.267 (Depositor), 0.269 (DCC) 
  • R-Value Work: 
    0.226 (Depositor), 0.245 (DCC) 
  • R-Value Observed: 
    0.228 (Depositor) 

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 8ITE

This is version 1.1 of the entry. See complete history

Literature

The E301R protein of African swine fever virus functions as a sliding clamp involved in viral genome replication.

Li, S.Ge, H.Li, Y.Zhang, K.Yu, S.Cao, H.Wang, Y.Deng, H.Li, J.Dai, J.Li, L.F.Luo, Y.Sun, Y.Geng, Z.Dong, Y.Zhang, H.Qiu, H.J.

(2023) mBio 14: e0164523-e0164523

  • DOI: https://doi.org/10.1128/mbio.01645-23
  • Primary Citation Related Structures: 
    8ITE

  • PubMed Abstract: 

    Sliding clamp is a highly conserved protein in the evolution of prokaryotic and eukaryotic cells. The sliding clamp is required for genomic replication as a critical co-factor of DNA polymerases. However, the sliding clamp analogs in viruses remain largely unknown. We found that the ASFV E301R protein (pE301R) exhibited a sliding clamp-like structure and similar functions during ASFV replication. Interestingly, pE301R is assembled into a unique ring-shaped homotetramer distinct from sliding clamps or proliferating cell nuclear antigens (PCNAs) from other species. Notably, the E301R gene is required for viral life cycle, but the pE301R function can be partially restored by the porcine PCNA. This study not only highlights the functional role of the ASFV pE301R as a viral sliding clamp analog, but also facilitates the dissection of the complex replication mechanism of ASFV, which provides novel clues for developing antivirals against ASF.


  • Organizational Affiliation
    • State Key Laboratory for Animal Disease Control and Prevention, National African Swine Fever Para-Reference Laboratory, National High-Containment Facilities for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences , Harbin, China.

Macromolecule Content 

  • Total Structure Weight: 35.3 kDa 
  • Atom Count: 2,337 
  • Modeled Residue Count: 274 
  • Deposited Residue Count: 301 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Uncharacterized protein E301R301African swine fever virusMutation(s): 0 
Gene Names: Ba71V-128E301R
UniProt
Find proteins for Q65196 (African swine fever virus (strain Badajoz 1971 Vero-adapted))
Explore Q65196 
Go to UniProtKB:  Q65196
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ65196
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free:  0.267 (Depositor), 0.269 (DCC) 
  • R-Value Work:  0.226 (Depositor), 0.245 (DCC) 
  • R-Value Observed: 0.228 (Depositor) 
Space Group: I 4
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 107.62α = 90
b = 107.62β = 90
c = 75.25γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31970152

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-13
    Type: Initial release
  • Version 1.1: 2024-03-27
    Changes: Database references