8ISJ

Pr conformer of Arabidopsis thaliana phytochrome A - AtphyA-Pr

PDB DOI: https://doi.org/10.2210/pdb8ISJ/pdb
EM Map EMD-35692: EMDB EMDataResource

Classification: PLANT PROTEIN
Organism(s): Arabidopsis thaliana
Expression System: Insect cell expression vector pTIE1
Mutation(s): No

Deposited: 2023-03-20 Released: 2023-08-09
Deposition Author(s): Zhang, Y., Ma, C., Zhao, J., Gao, N., Wang, J.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.00 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural insights into plant phytochrome A as a highly sensitized photoreceptor.

Zhang, Y., Lin, X., Ma, C., Zhao, J., Shang, X., Wang, Z., Xu, B., Gao, N., Deng, X.W., Wang, J.

(2023) Cell Res 33: 806-809

PubMed: 37491602 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1038/s41422-023-00858-4
Primary Citation of Related Structures:
8ISI, 8ISJ, 8ISK

Organizational Affiliation

National Key Laboratory of Wheat Improvement, Peking University Institute of Advanced Agricultural Sciences, Shandong Laboratory of Advanced Agriculture Sciences at Weifang, Weifang, Shandong, China.

Macromolecule Content

Total Structure Weight: 249.99 kDa
Atom Count: 13,533
Modelled Residue Count: 1,716
Deposited Residue Count: 2,240
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phytochrome A	A, B	1,120	Arabidopsis thaliana	Mutation(s): 0 Gene Names: PHYA, FHY2, FRE1, HY8, At1g09570, F14J9.23
UniProt
Find proteins for P14712 (Arabidopsis thaliana) Explore P14712 Go to UniProtKB: P14712
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P14712
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
O6E (Subject of Investigation/LOI) Query on O6E Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth B]	C [auth A], D [auth B]	3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid C₃₃ H₃₈ N₄ O₆ SRFSSETUPHUBBC-GMXXPEQVSA-N		Interactions Focus chain C [auth A] Focus chain D [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth B]