8ILJ | pdb_00008ilj

S-formylglutathione hydrolase (BuSFGH) from Burkholderiaceae sp.

• PDB DOI: https://doi.org/10.2210/pdb8ILJ/pdb

• Classification: HYDROLASE
• Organism(s): Burkholderiaceae
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-03-03 Released: 2024-01-10 
• Deposition Author(s): Hwang, J., Lee, J.H., Do, H.
• Funding Organization(s): National Research Foundation (NRF, Korea)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.73 Å
• R-Value Free: 
  0.210 (Depositor), 0.220 (DCC) 
• R-Value Work: 
  0.195 (Depositor), 0.200 (DCC) 
• R-Value Observed: 
  0.195 (Depositor) 

Starting Model: experimental

Literature

Crystal structure and functional characterization of an S-formylglutathione hydrolase (BuSFGH) from Burkholderiaceae sp.

Hwang, J., Do, H., Shim, Y.S., Lee, J.H.

(2023) Crystals (Basel) 13

• DOI: https://doi.org/10.3390/cryst13040621

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: equilibrium centrifugation

Macromolecule Content 

• Total Structure Weight: 61.68 kDa 
• Atom Count: 4,772 
• Modeled Residue Count: 562 
• Deposited Residue Count: 562 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
S-formylglutathione hydrolase	A, B	281	Burkholderiaceae	Mutation(s): 0  Gene Names: PAMC26510_23250 EC: 3.1.2.12
UniProt
Find proteins for A0A242MJ43 (Caballeronia sordidicola) Explore A0A242MJ43  Go to UniProtKB:  A0A242MJ43

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.73 Å
• R-Value Free:  0.210 (Depositor), 0.220 (DCC) 
• R-Value Work:  0.195 (Depositor), 0.200 (DCC) 
• R-Value Observed: 0.195 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.37	α = 90
b = 109.29	β = 90
c = 112.62	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-01-10 
Deposition Author(s): Hwang, J., Lee, J.H., Do, H.

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Funding Organization	Location	Grant Number
National Research Foundation (NRF, Korea)	Korea, Republic Of	PM22030

Revision History  

• Version 1.0: 2024-01-10
  Type: Initial release