8IJ8 | pdb_00008ij8

Crystal structure of alcohol dehydrogenase M4 mutant from Burkholderia gladioli

• PDB DOI: https://doi.org/10.2210/pdb8IJ8/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Burkholderia gladioli BSR3
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2023-02-26 Released: 2024-02-28 
• Deposition Author(s): Han, X., Mei, Z.L., Liu, W.D., Sun, Z.T., Ma, J.A.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.38 Å
• R-Value Free: 
  0.258 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.225 (Depositor), 0.230 (DCC) 
• R-Value Observed: 
  0.227 (Depositor) 

Starting Model: in silico

Literature

Crystal structure of alcohol dehydrogenase M4 mutant from Burkholderia gladioli

Han, X., Mei, Z.L., Liu, W.D., Sun, Z.T., Ma, J.A.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 207.64 kDa 
• Atom Count: 14,566 
• Modeled Residue Count: 1,983 
• Deposited Residue Count: 2,008 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative short-chain dehydrogenases/reductase family protein	A, B, C, D, E, F, G, H	251	Burkholderia gladioli BSR3	Mutation(s): 4  Gene Names: bgla_2g00620
UniProt
Find proteins for F2LIG4 (Burkholderia gladioli (strain BSR3)) Explore F2LIG4  Go to UniProtKB:  F2LIG4

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.38 Å
• R-Value Free:  0.258 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.225 (Depositor), 0.230 (DCC) 
• R-Value Observed: 0.227 (Depositor) 

Space Group: P 4

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 141.305	α = 90
b = 141.305	β = 90
c = 164.757	γ = 90

Software Package:

Software Name	Purpose
HKL-3000	data scaling
HKL-3000	data reduction
PHENIX	refinement
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-02-28 
Deposition Author(s): Han, X., Mei, Z.L., Liu, W.D., Sun, Z.T., Ma, J.A.

---

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History  

• Version 1.0: 2024-02-28
  Type: Initial release