8IHN

Cryo-EM structure of the Rpd3S core complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.37 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural basis for nucleosome binding and catalysis by the yeast Rpd3S/HDAC holoenzyme.

Zhang, Y.Xu, M.Wang, P.Zhou, J.Wang, G.Han, S.Cai, G.Wang, X.

(2023) Cell Res 33: 971-974


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H324Xenopus laevisMutation(s): 0 
Gene Names: LOC121398065LOC108703785LOC121398067
UniProt
Find proteins for P84233 (Xenopus laevis)
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UniProt GroupP84233
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Transcriptional regulatory protein SIN3B [auth K]1,536Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P22579 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP22579
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Histone deacetylase RPD3C [auth L]433Saccharomyces cerevisiaeMutation(s): 0 
EC: 3.5.1.98
UniProt
Find proteins for P32561 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
RCO1 isoform 1D [auth M],
F [auth O]
684Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for Q04779 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupQ04779
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Chromatin modification-related protein EAF3E [auth N],
G [auth P]
401Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for Q12432 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupQ12432
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.37 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-03-20
    Type: Initial release