8IEX

Solution structure of AtWRKY11-DBD

PDB DOI: https://doi.org/10.2210/pdb8IEX/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Arabidopsis thaliana
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-02-16 Released: 2024-02-21
Deposition Author(s): Dong, X., Hu, Y.F.
Funding Organization(s): National Science Foundation (NSF, China)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 216
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Solution structure of AtWRKY11-DBD

Hu, Y.F., Dong, X.

To be published.

Macromolecule Content

Total Structure Weight: 11.09 kDa
Atom Count: 715
Modelled Residue Count: 88
Deposited Residue Count: 94
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable WRKY transcription factor 11	A	94	Arabidopsis thaliana	Mutation(s): 0 Gene Names: WRKY11, At4g31550, F3L17.120
UniProt
Find proteins for Q9SV15 (Arabidopsis thaliana) Explore Q9SV15 Go to UniProtKB: Q9SV15
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9SV15
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN (Subject of Investigation/LOI) Query on ZN Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A]	B [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 216
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-02-21

Deposition Author(s):

Funding Organization	Location	Grant Number
National Science Foundation (NSF, China)	China	21991083

Revision History (Full details and data files)

Version 1.0: 2024-02-21
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.