8IDZ | pdb_00008idz

Beta-glucosidase BglPcC1

• PDB DOI: https://doi.org/10.2210/pdb8IDZ/pdb

• Classification: HYDROLASE
• Organism(s): Segatella copri
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2023-02-14 Released: 2024-02-21 
• Deposition Author(s): Zhou, J.P., Zhu, H.R., Zhang, R., Huang, Z.X.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 4.00 Å
• R-Value Free: 
  0.302 (Depositor), 0.300 (DCC) 
• R-Value Work: 
  0.250 (Depositor), 0.250 (DCC) 
• R-Value Observed: 
  0.253 (Depositor) 

Starting Model: other

Literature

Conversion of ginsenosides using beta-glucosidase BglPcC1

Zhu, H.R., Zhang, R., Huang, Z.X., Zhou, J.P.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 166.63 kDa 
• Atom Count: 10,937 
• Modeled Residue Count: 1,419 
• Deposited Residue Count: 1,522 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta-glucosidase	A, B	761	Segatella copri	Mutation(s): 0  Gene Names: DWV76_09375
UniProt
Find proteins for A0AA92W5L2 (Segatella copri) Explore A0AA92W5L2  Go to UniProtKB:  A0AA92W5L2

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 4.00 Å
• R-Value Free:  0.302 (Depositor), 0.300 (DCC) 
• R-Value Work:  0.250 (Depositor), 0.250 (DCC) 
• R-Value Observed: 0.253 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 182.607	α = 90
b = 133.842	β = 102.62
c = 69.843	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-02-21 
Deposition Author(s): Zhou, J.P., Zhu, H.R., Zhang, R., Huang, Z.X.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-02-21
  Type: Initial release