8I8E

Acyl-ACP synthetase structure bound to C18:1-ACP

PDB DOI: https://doi.org/10.2210/pdb8I8E/pdb
EM Map EMD-35249: EMDB EMDataResource

Classification: TRANSPORT PROTEIN/CYTOSOLIC PROTEIN
Organism(s): Escherichia coli, Vibrio harveyi
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-02-04 Released: 2024-02-07
Deposition Author(s): Huang, H., Wang, C., Chang, S., Cui, T., Xu, Y., Zhang, H., Zhou, C., Zhang, X., Feng, Y.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.63 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Acyl-ACP synthetase structure bound to C18:1-ACP

Huang, H., Wang, C., Chang, S., Cui, T., Xu, Y., Zhang, H., Zhou, C., Zhang, X., Feng, Y.

To be published.

Macromolecule Content

Total Structure Weight: 420.78 kDa
Atom Count: 29,058
Modelled Residue Count: 3,612
Deposited Residue Count: 3,666
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acyl carrier protein	A [auth f] H [auth a] I [auth b] J [auth c] K [auth d] A [auth f], H [auth a], I [auth b], J [auth c], K [auth d], L [auth e]	78	Escherichia coli	Mutation(s): 0 Gene Names: acpP
UniProt
Find proteins for F4SVY1 (Escherichia coli M605) Explore F4SVY1 Go to UniProtKB: F4SVY1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	F4SVY1
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Acyl-acyl carrier protein synthetase	B [auth D] C [auth A] D [auth F] E [auth B] F [auth C] B [auth D], C [auth A], D [auth F], E [auth B], F [auth C], G [auth E]	533	Vibrio harveyi	Mutation(s): 0 Gene Names: aasS, AL538_21690
UniProt
Find proteins for Q00IB3 (Vibrio harveyi) Explore Q00IB3 Go to UniProtKB: Q00IB3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q00IB3
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PNS (Subject of Investigation/LOI) Query on PNS Download Ideal Coordinates CCD File SDF format, chain AA [auth b] SDF format, chain BA [auth c] SDF format, chain CA [auth d] SDF format, chain DA [auth e] SDF format, chain M [auth f] SDF format, chain Z [auth a] MOL2 format, chain AA [auth b] MOL2 format, chain BA [auth c] MOL2 format, chain CA [auth d] MOL2 format, chain DA [auth e] MOL2 format, chain M [auth f] MOL2 format, chain Z [auth a]	AA [auth b] BA [auth c] CA [auth d] DA [auth e] M [auth f] AA [auth b], BA [auth c], CA [auth d], DA [auth e], M [auth f], Z [auth a]	4'-PHOSPHOPANTETHEINE C₁₁ H₂₃ N₂ O₇ P S JDMUPRLRUUMCTL-VIFPVBQESA-N		Interactions Focus chain AA [auth b] Focus chain BA [auth c] Focus chain CA [auth d] Focus chain DA [auth e] Focus chain M [auth f] Focus chain Z [auth a] Interactions & Density Focus chain AA [auth b] Focus chain BA [auth c] Focus chain CA [auth d] Focus chain DA [auth e] Focus chain M [auth f] Focus chain Z [auth a]
AMP (Subject of Investigation/LOI) Query on AMP Download Ideal Coordinates CCD File SDF format, chain N [auth D] SDF format, chain P [auth A] SDF format, chain R [auth F] SDF format, chain T [auth B] SDF format, chain V [auth C] SDF format, chain X [auth E] MOL2 format, chain N [auth D] MOL2 format, chain P [auth A] MOL2 format, chain R [auth F] MOL2 format, chain T [auth B] MOL2 format, chain V [auth C] MOL2 format, chain X [auth E]	N [auth D] P [auth A] R [auth F] T [auth B] V [auth C] N [auth D], P [auth A], R [auth F], T [auth B], V [auth C], X [auth E]	ADENOSINE MONOPHOSPHATE C₁₀ H₁₄ N₅ O₇ P UDMBCSSLTHHNCD-KQYNXXCUSA-N		Interactions Focus chain N [auth D] Focus chain P [auth A] Focus chain R [auth F] Focus chain T [auth B] Focus chain V [auth C] Focus chain X [auth E] Interactions & Density Focus chain N [auth D] Focus chain P [auth A] Focus chain R [auth F] Focus chain T [auth B] Focus chain V [auth C] Focus chain X [auth E]
OLA (Subject of Investigation/LOI) Query on OLA Download Ideal Coordinates CCD File SDF format, chain O [auth D] SDF format, chain Q [auth A] SDF format, chain S [auth F] SDF format, chain U [auth B] SDF format, chain W [auth C] SDF format, chain Y [auth E] MOL2 format, chain O [auth D] MOL2 format, chain Q [auth A] MOL2 format, chain S [auth F] MOL2 format, chain U [auth B] MOL2 format, chain W [auth C] MOL2 format, chain Y [auth E]	O [auth D] Q [auth A] S [auth F] U [auth B] W [auth C] O [auth D], Q [auth A], S [auth F], U [auth B], W [auth C], Y [auth E]	OLEIC ACID C₁₈ H₃₄ O₂ ZQPPMHVWECSIRJ-KTKRTIGZSA-N		Interactions Focus chain O [auth D] Focus chain Q [auth A] Focus chain S [auth F] Focus chain U [auth B] Focus chain W [auth C] Focus chain Y [auth E] Interactions & Density Focus chain O [auth D] Focus chain Q [auth A] Focus chain S [auth F] Focus chain U [auth B] Focus chain W [auth C] Focus chain Y [auth E]