8I8D

Acyl-ACP synthetase structure bound to MC7-ACP

PDB DOI: https://doi.org/10.2210/pdb8I8D/pdb
EM Map EMD-35248: EMDB EMDataResource

Classification: CYTOSOLIC PROTEIN/TRANSPORT PROTEIN
Organism(s): Vibrio harveyi, Escherichia coli
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-02-03 Released: 2024-02-07
Deposition Author(s): Huang, H., Wang, C., Chang, S., Cui, T., Xu, Y., Zhang, H., Zhou, C., Zhang, X., Feng, Y.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.51 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Acyl-ACP synthetase structure bound to MC7-ACP

Huang, H., Wang, C., Chang, S., Cui, T., Xu, Y., Zhang, H., Zhou, C., Zhang, X., Feng, Y.

To be published.

Macromolecule Content

Total Structure Weight: 420.13 kDa
Atom Count: 29,130
Modelled Residue Count: 3,624
Deposited Residue Count: 3,666
Unique protein chains: 2

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acyl-acyl carrier protein synthetase	A, B, C, D, E A, B, C, D, E, F	533	Vibrio harveyi	Mutation(s): 0 Gene Names: aasS, AL538_21690
UniProt
Find proteins for Q00IB3 (Vibrio harveyi) Explore Q00IB3 Go to UniProtKB: Q00IB3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q00IB3
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Acyl carrier protein	G [auth f] H [auth a] I [auth b] J [auth c] K [auth d] G [auth f], H [auth a], I [auth b], J [auth c], K [auth d], L [auth e]	78	Escherichia coli	Mutation(s): 0 Gene Names: acpP
UniProt
Find proteins for F4SVY1 (Escherichia coli M605) Explore F4SVY1 Go to UniProtKB: F4SVY1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	F4SVY1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PN7 (Subject of Investigation/LOI) Query on PN7 Download Ideal Coordinates CCD File SDF format, chain AA [auth b] SDF format, chain BA [auth c] SDF format, chain CA [auth d] SDF format, chain DA [auth e] SDF format, chain Y [auth f] SDF format, chain Z [auth a] MOL2 format, chain AA [auth b] MOL2 format, chain BA [auth c] MOL2 format, chain CA [auth d] MOL2 format, chain DA [auth e] MOL2 format, chain Y [auth f] MOL2 format, chain Z [auth a]	AA [auth b] BA [auth c] CA [auth d] DA [auth e] Y [auth f] AA [auth b], BA [auth c], CA [auth d], DA [auth e], Y [auth f], Z [auth a]	N~3~-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-(2-sulfanylethyl)-beta-alaninamide C₁₁ H₂₃ N₂ O₇ P S JDMUPRLRUUMCTL-SECBINFHSA-N		Interactions Focus chain AA [auth b] Focus chain BA [auth c] Focus chain CA [auth d] Focus chain DA [auth e] Focus chain Y [auth f] Focus chain Z [auth a] Interactions & Density Focus chain AA [auth b] Focus chain BA [auth c] Focus chain CA [auth d] Focus chain DA [auth e] Focus chain Y [auth f] Focus chain Z [auth a]
AMP (Subject of Investigation/LOI) Query on AMP Download Ideal Coordinates CCD File SDF format, chain N [auth A] SDF format, chain P [auth B] SDF format, chain R [auth C] SDF format, chain T [auth D] SDF format, chain V [auth E] SDF format, chain X [auth F] MOL2 format, chain N [auth A] MOL2 format, chain P [auth B] MOL2 format, chain R [auth C] MOL2 format, chain T [auth D] MOL2 format, chain V [auth E] MOL2 format, chain X [auth F]	N [auth A] P [auth B] R [auth C] T [auth D] V [auth E] N [auth A], P [auth B], R [auth C], T [auth D], V [auth E], X [auth F]	ADENOSINE MONOPHOSPHATE C₁₀ H₁₄ N₅ O₇ P UDMBCSSLTHHNCD-KQYNXXCUSA-N		Interactions Focus chain N [auth A] Focus chain P [auth B] Focus chain R [auth C] Focus chain T [auth D] Focus chain V [auth E] Focus chain X [auth F] Interactions & Density Focus chain N [auth A] Focus chain P [auth B] Focus chain R [auth C] Focus chain T [auth D] Focus chain V [auth E] Focus chain X [auth F]
OP3 (Subject of Investigation/LOI) Query on OP3 Download Ideal Coordinates CCD File SDF format, chain M [auth A] SDF format, chain O [auth B] SDF format, chain Q [auth C] SDF format, chain S [auth D] SDF format, chain U [auth E] SDF format, chain W [auth F] MOL2 format, chain M [auth A] MOL2 format, chain O [auth B] MOL2 format, chain Q [auth C] MOL2 format, chain S [auth D] MOL2 format, chain U [auth E] MOL2 format, chain W [auth F]	M [auth A] O [auth B] Q [auth C] S [auth D] U [auth E] M [auth A], O [auth B], Q [auth C], S [auth D], U [auth E], W [auth F]	7-methoxy-7-oxidanylidene-heptanoic acid C₈ H₁₄ O₄ YOLQOHRXBGFZED-UHFFFAOYSA-N		Interactions Focus chain M [auth A] Focus chain O [auth B] Focus chain Q [auth C] Focus chain S [auth D] Focus chain U [auth E] Focus chain W [auth F] Interactions & Density Focus chain M [auth A] Focus chain O [auth B] Focus chain Q [auth C] Focus chain S [auth D] Focus chain U [auth E] Focus chain W [auth F]