8I6J

The focused refinement of CCT3-PhLP2A from TRiC-PhLP2A complex in the open state

• PDB DOI: https://doi.org/10.2210/pdb8I6J/pdb
• EM Map EMD-35199: EMDB EMDataResource

• Classification: CHAPERONE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli, Trichoplusia ni
• Mutation(s): No 


• Deposited: 2023-01-28 Released: 2024-01-31 
• Deposition Author(s): Roh, S.H., Park, J., Kim, H., Lim, S.
• Funding Organization(s): National Research Foundation (NRF, Korea)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.82 Å
• Aggregation State: 2D ARRAY 
• Reconstruction Method: SINGLE PARTICLE 

Literature

The focused refinement of CCT3-PhLP2A from TRiC-PhLP2A complex in the open state

Roh, S.H., Park, J., Kim, H., Lim, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: native gel electrophoresis

Macromolecule Content

• Total Structure Weight: 88.69 kDa 
• Atom Count: 5,287 
• Modelled Residue Count: 670 
• Deposited Residue Count: 784 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phosducin-like protein 3	A [auth Q]	239	Homo sapiens	Mutation(s): 0  Gene Names: PDCL3, PhLP2A
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H2J4 (Homo sapiens) Explore Q9H2J4  Go to UniProtKB:  Q9H2J4
GTEx:  ENSG00000115539

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
T-complex protein 1 subunit gamma	B [auth C]	545	Homo sapiens	Mutation(s): 0  Gene Names: CCT3, CCTG, TRIC5
UniProt & NIH Common Fund Data Resources
Find proteins for P49368 (Homo sapiens) Explore P49368  Go to UniProtKB:  P49368
PHAROS:  P49368 GTEx:  ENSG00000163468

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ADP (Subject of Investigation/LOI)	C	ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.82 Å
• Aggregation State: 2D ARRAY 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.19
MODEL REFINEMENT	Coot	0.9.6
RECONSTRUCTION	cryoSPARC	3.2.0

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-01-31 
Deposition Author(s): Roh, S.H., Park, J., Kim, H., Lim, S.

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Funding Organization	Location	Grant Number
National Research Foundation (NRF, Korea)	Korea, Republic Of	--

Revision History  

• Version 1.0: 2024-01-31
  Type: Initial release