Download MendeleyCrystal structure of protease-associated domain of Arabidopsis vacuolar sorting receptor 1 at pH 4.6
Tsao, H.E., Lui, S.N., Wong, K.B.To be published.
8HYG
Crystal structure of protease-associated domain of Arabidopsis vacuolar sorting receptor 1 at pH 4.6
- PDB DOI: https://doi.org/10.2210/pdb8HYG/pdb
- Classification: PROTEIN TRANSPORT
- Organism(s): Arabidopsis thaliana
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2023-01-06 Released: 2023-01-25
- Funding Organization(s): The University Grants Committee, Research Grants Council (RGC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.224
- R-Value Work: 0.169
- R-Value Observed: 0.172
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Vacuolar-sorting receptor 1 | 165 | Arabidopsis thaliana | Mutation(s): 0 Gene Names: VSR1, BP80B, ELP, ELP1, At3g52850, F8J2.20 |  | |
UniProt | |||||
Find proteins for P93026 (Arabidopsis thaliana) Explore P93026 Go to UniProtKB: P93026 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P93026 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EPE Query on EPE | E [auth A] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N |  | ||
| PEG Query on PEG | C [auth A], F [auth A], G [auth A], H [auth A], L [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | B [auth A], I [auth A], J [auth A], K [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| CL Query on CL | D [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.224
- R-Value Work: 0.169
- R-Value Observed: 0.172
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 32.987 | α = 90 |
| b = 60.318 | β = 103.36 |
| c = 38.466 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-01-25 Deposition Author(s): Tsao, H.E., Lui, S.N., Wong, K.B.
| Funding Organization | Location | Grant Number |
|---|---|---|
| The University Grants Committee, Research Grants Council (RGC) | Hong Kong | CUHK14151416 |
| The University Grants Committee, Research Grants Council (RGC) | Hong Kong | C4041-18EF |
| The University Grants Committee, Research Grants Council (RGC) | Hong Kong | AoE/M-05/12 |
| The University Grants Committee, Research Grants Council (RGC) | Hong Kong | AoE/M403/16 |
| The University Grants Committee, Research Grants Council (RGC) | Hong Kong | C4033-19E |
Revision History (Full details and data files)
- Version 1.0: 2023-01-25
Type: Initial release
