8HWO

Crystal Structure of mutant GDSL Esterase of Photobacterium sp. J15

PDB DOI: https://doi.org/10.2210/pdb8HWO/pdb

Classification: HYDROLASE
Organism(s): Photobacterium sp. J15
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2023-01-01 Released: 2024-01-17
Deposition Author(s): Rahman, N.N.A., Leow, T.C., Jonet, M.A.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.96 Å
R-Value Free: 0.299
R-Value Work: 0.244

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

X-ray crystallography of mutant GDSL esterase S12A of

Rahman, N.N.A., Sharif, F.M., Kamarudin, N.H.A., Ali, M.S.M., Aris, S.N.A.M., Jonet, M.A., Rahman, R.N.Z.R.A., Sabri, S., Leow, T.C.

(2023) 3 Biotech 13: 128

Macromolecule Content

Total Structure Weight: 35.64 kDa
Atom Count: 2,515
Modelled Residue Count: 328
Deposited Residue Count: 328
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GDSL-family esterase	A	328	Photobacterium sp. J15	Mutation(s): 1
UniProt
Find proteins for A0A0K0PV22 (Photobacterium sp. J15(2011)) Explore A0A0K0PV22 Go to UniProtKB: A0A0K0PV22
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0K0PV22
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.96 Å
R-Value Free: 0.299
R-Value Work: 0.244
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 55.12	α = 90
b = 55.82	β = 90
c = 120.11	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
iMOSFLM	data reduction
HKL-3000	data scaling
HKL-3000	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-01-17

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government		--

Revision History (Full details and data files)

Version 1.0: 2024-01-17
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.