8HUZ | pdb_00008huz

the structure of trans-editing factor ProX

• PDB DOI: https://doi.org/10.2210/pdb8HUZ/pdb

• Classification: TRANSLATION
• Organism(s): Mus musculus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-12-25 Released: 2024-01-17 
• Deposition Author(s): Chen, M., Zhou, X.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.30 Å
• R-Value Free: 
  0.337 (Depositor), 0.340 (DCC) 
• R-Value Work: 
  0.286 (Depositor), 0.290 (DCC) 
• R-Value Observed: 
  0.290 (Depositor) 

Starting Model: experimental

Literature

the structure of trans-editing factor ProX

Yuan, C., Xiao, Y., Zhou, X., Chen, M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors.

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 assigned by authors.

Biological Assembly 5  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 5 assigned by authors.

Biological Assembly 6  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 6 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 113.33 kDa 
• Atom Count: 7,227 
• Modeled Residue Count: 957 
• Deposited Residue Count: 1,014 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Prolyl-tRNA synthetase associated domain-containing protein 1	A [auth F], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E]	169	Mus musculus	Mutation(s): 0  Gene Names: Prorsd1, Prdxdd1
UniProt
Find proteins for Q9D820 (Mus musculus) Explore Q9D820  Go to UniProtKB:  Q9D820

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.30 Å
• R-Value Free:  0.337 (Depositor), 0.340 (DCC) 
• R-Value Work:  0.286 (Depositor), 0.290 (DCC) 
• R-Value Observed: 0.290 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 86.802	α = 90
b = 94.722	β = 90
c = 165.526	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-01-17 
Deposition Author(s): Chen, M., Zhou, X.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History  

• Version 1.0: 2024-01-17
  Type: Initial release