8HQU | pdb_00008hqu

Crystal structure of the major sperm protein domain of SCS2 from saccharomyces cerevisiae

PDB DOI: https://doi.org/10.2210/pdb8HQU/pdb

Classification: CELL ADHESION
Organism(s): Saccharomyces cerevisiae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-12-14 Released: 2023-12-27
Deposition Author(s): Wang, C.C.
Funding Organization(s): National Science Foundation (NSF, China)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.255 (Depositor), 0.259 (DCC)
R-Value Work:
0.218 (Depositor), 0.218 (DCC)
R-Value Observed:
0.220 (Depositor)

Starting Model: in silico
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Literature

Structural insights into the major sperm protein domain of SCS2 from saccharomyces cerevisiae

Xu, T., Wang, C.C.

To be published.

Macromolecule Content

Total Structure Weight: 15.12 kDa
Atom Count: 1,032
Modeled Residue Count: 124
Deposited Residue Count: 136
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Vesicle-associated membrane protein-associated protein SCS2	A	136	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: SCS2, YER120W
UniProt
Find proteins for P40075 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40075 Go to UniProtKB: P40075
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P40075
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.255 (Depositor), 0.259 (DCC)
R-Value Work: 0.218 (Depositor), 0.218 (DCC)
R-Value Observed: 0.220 (Depositor)

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 68.507	α = 90
b = 68.507	β = 90
c = 56.237	γ = 120

Software Package:

Software Name	Purpose
Coot	model building
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-12-27

Deposition Author(s):

Funding Organization	Location	Grant Number
National Science Foundation (NSF, China)	China	--

Revision History (Full details and data files)

Version 1.0: 2023-12-27
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.