8HMW | pdb_00008hmw

Double methyl modification on guanosine promotes unusual structural distortion and conformational transition in Z-DNA

  • Classification: DNA
  • Organism(s): DNA molecule
  • Mutation(s): No 

  • Deposited: 2022-12-06 Released: 2023-04-26 
  • Deposition Author(s): Lee, J.-H., Oh, K.-I.
  • Funding Organization(s): National Research Foundation (NRF, Korea), Samsung Science and Technology Foundation

Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: all calculated structures submitted 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history. 


Literature

Entropy-driven conformational transition of flexible Z-DNA to a novel non-B helix by double-methylated guanosine

Oh, K.-I., Lee, J.-H.

(2023) J Mol Liq 


Macromolecules

Find similar nucleic acids by:  Sequence  

Entity ID: 1
MoleculeChains LengthOrganismImage
DNA (5'-D(*CP*GP*CP*(SJO)P*CP*G)-3')
A, B
6DNA molecule
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: all calculated structures submitted 

Structure Validation

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View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic Of2020R1A2C1006909
National Research Foundation (NRF, Korea)Korea, Republic Of2022R1A4A1021817
National Research Foundation (NRF, Korea)Korea, Republic Of2022R1C1C2011648
Samsung Science and Technology FoundationKorea, Republic OfSSTF-BA1701-10

Revision History  (Full details and data files)

  • Version 1.0: 2023-04-26
    Type: Initial release
  • Version 1.1: 2023-11-08
    Changes: Data collection, Database references
  • Version 1.2: 2024-05-15
    Changes: Database references